Yu Hailong, Zhang Meiyan, Sun Yating, Li Qiaozhen, Liu Jianyu, Song Chunyan, Shang Xiaodong, Tan Qi, Zhang Lujun, Yu Hao
National Engineering Research Center of Edible Fungi, Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, China.
College of Horticulture, Shenyang Agricultural University, Shenyang, China.
Front Microbiol. 2022 Aug 16;13:941889. doi: 10.3389/fmicb.2022.941889. eCollection 2022.
Most of the sequenced wood-rotting edible mushroom produce fruiting body at relatively low temperatures. Little information has been known about the high-temperature wood-rotting mushroom. Here, we performed sequencing and assembly of the genome of a high-temperature edible mushroom from a monokaryotic strain zhudugu2 using the Illumina and Pac-Bio CLR sequencing technologies. , also known as Zhudugu in China, is a well-known culinary edible mushroom that has been widely distributed and cultivated in China, Southeast Asia, and South Asia. The genome consists of 40.00 Mb in 27 contigs with a contig N50 of 4.384 Mb. Phylogenetic analysis reveals that and other strains in clustered in one clade. Phylogenetic analysis and average nucleotide identity analysis indicated that the genome showed a closer relationship with other species. Chromosome collinearity analysis revealed a high level of collinearity between and . There are 12,628 protein-coding genes annotated in this monoploid genome. A total of 481 enzymes accounting for 514 carbohydrate-active enzymes (CAZymes) terms were identified in the genome, including 15 laccases and 10 class II peroxidases predicted in the genome, which revealed the robustness of lignocellulose degradation capacity of . The mating- type locus of consisted of a pair of homeodomain mating-type genes and . The mating- type locus of consisted of at least four pheromone receptor genes and three pheromone genes. The genome is not only beneficial for the genome-assisted breeding of this mushroom but also helps us to understand the high-temperature tolerance of the edible mushroom.
大多数已测序的木腐食用菌在相对较低的温度下产生子实体。关于高温木腐菌的信息知之甚少。在此,我们使用Illumina和Pac-Bio CLR测序技术对单核菌株猪肚菇2的高温食用菌基因组进行了测序和组装。猪肚菇在中国也被称为猪肚菇,是一种著名的可食用蘑菇,已在中国、东南亚和南亚广泛分布和栽培。该基因组由27个重叠群组成,大小为40.00 Mb,重叠群N50为4.384 Mb。系统发育分析表明,猪肚菇与其他猪肚菇属菌株聚集在一个进化枝中。系统发育分析和平均核苷酸同一性分析表明,猪肚菇基因组与其他猪肚菇属物种显示出更密切的关系。染色体共线性分析显示猪肚菇与其他物种之间具有高度的共线性。在这个单倍体基因组中注释了12,628个蛋白质编码基因。在猪肚菇基因组中总共鉴定出481种酶,占514个碳水化合物活性酶(CAZyme)条目,包括基因组中预测的15种漆酶和10种II类过氧化物酶,这揭示了猪肚菇木质纤维素降解能力的稳健性。猪肚菇的交配型位点由一对同源域交配型基因和组成。猪肚菇的交配型位点由至少四个信息素受体基因和三个信息素基因组成。该基因组不仅有利于这种蘑菇的基因组辅助育种,也有助于我们了解食用菌的高温耐受性。