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单核菌株PC80的染色体水平基因组公布

Chromosome-Level Genome Announcement of the Monokaryotic Strain PC80.

作者信息

Wu Jie, Sun Wenhua, Zheng Jingkang, Liu Jinling, Liang Xuedi, Liu Qin, Kong Weili

机构信息

Institute of Edible Fungi, Henan Academy of Agricultural Sciences, Key Laboratory of Evaluation and Utilization of Germplasm Resources of Edible Fungi in Huang-Huai-Hai Region, Ministry of Agriculture and Rural Affairs, Zhengzhou 450002, China.

出版信息

J Fungi (Basel). 2025 Jul 29;11(8):563. doi: 10.3390/jof11080563.

DOI:10.3390/jof11080563
PMID:40863516
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12387193/
Abstract

is a widely cultivated edible fungus in China, renowned for its rich nutritional composition and diverse medicinal compounds. However, the quality of the currently published genomes remained suboptimal, which limited in-depth research on its evolution, growth, and development. In this study, we conducted a chromosome-level genome assembly of the monokaryotic basidiospore strain PC80. The assembled genome spanned 40.6 Mb and consisted of 15 scaffolds. Ten of these scaffolds contained complete telomere-to-telomere structures. The scaffold N50 value was 3.6 Mb. Genome annotation revealed 634 carbohydrate-active enzyme (CAZyme) family genes. Through collinearity analysis, we further confirmed that the PC80 genome exhibited higher completeness and greater accuracy compared to the currently published genomes of . At the locus of PC80, three genes and one gene were identified. At the locus, seven pheromone receptor genes and two pheromone precursor genes were detected. Further phylogenetic analysis indicated that three of these pheromone receptor genes are likely to have mating-specific functions. This complete genome assembly could provide a foundation for future genomic and genetic studies, facilitate the identification of key genes related to growth and developmental regulation, and promote technological innovations in breeding and efficient utilization.

摘要

是中国广泛栽培的食用真菌,以其丰富的营养成分和多样的药用化合物而闻名。然而,目前已发表的基因组质量仍不理想,这限制了对其进化、生长和发育的深入研究。在本研究中,我们对单核担孢子菌株PC80进行了染色体水平的基因组组装。组装后的基因组跨度为40.6 Mb,由15个支架组成。其中10个支架包含完整的端粒到端粒结构。支架N50值为3.6 Mb。基因组注释揭示了634个碳水化合物活性酶(CAZyme)家族基因。通过共线性分析,我们进一步证实,与目前已发表的基因组相比,PC80基因组具有更高的完整性和准确性。在PC80的 位点,鉴定出三个 基因和一个 基因。在 位点,检测到七个信息素受体基因和两个信息素前体基因。进一步的系统发育分析表明,这些信息素受体基因中的三个可能具有交配特异性功能。这个完整的基因组组装可以为未来的基因组和遗传研究提供基础,有助于鉴定与生长和发育调控相关的关键基因,并促进 育种和高效利用方面的技术创新。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/706e32722a72/jof-11-00563-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/159698806fb0/jof-11-00563-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/75572e9e9048/jof-11-00563-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/9ddce417c652/jof-11-00563-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/613120bcb369/jof-11-00563-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/706e32722a72/jof-11-00563-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/159698806fb0/jof-11-00563-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/75572e9e9048/jof-11-00563-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/9ddce417c652/jof-11-00563-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/613120bcb369/jof-11-00563-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af06/12387193/706e32722a72/jof-11-00563-g005.jpg

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