Fang Ming, Wang Xiaoe, Chen Ying, Wang Peng, Lu Lixin, Lu Jia, Yao Fangjie, Zhang Youmin
Lab of genetic breeding of edible mushromm, Horticultural, College of Horticulture, Jilin Agricultural University, Changchun 130118, China.
Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China.
J Fungi (Basel). 2020 Mar 16;6(1):37. doi: 10.3390/jof6010037.
is one of the most popular edible fungi in China. In this study, the whole genome of was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes. As a wood-rotting fungus, a total of 509 carbohydrate-active enzymes (CAZymes) were annotated in order to explore its potential capabilities on wood degradation. The glycoside hydrolases (GH) family genes in the genome were more abundant than the genes in the other 11 mushrooms genomes. The genome contained 102 genes encoding class III, IV, and V ethanol dehydrogenases. Evolutionary analysis based on 562 orthologous single-copy genes from 15 mushrooms showed that formed an early independent branch of Agaricomycetes. The mating-type locus of was located on linkage group 8 by genetic linkage analysis. By combining the genome sequence analysis with the genetic linkage map, the mating-type locus of was located on scaffold45 and consisted of two subunits, α and β. Each subunit consisted of a pair of homeodomain mating-type protein genes and . The mapping revealed conserved synteny at the whole mating-type loci and mirror symmetry relations near the β subunit between and . This study proposed the potential for the bioethanol production by consolidated bioprocessing of . It will promote understanding of the lignocellulose degradation system and facilitate more efficient conversion of the agricultural wastes used for mushroom cultivation. It also will advance the research on the fruiting body development and evolution of .
是中国最受欢迎的食用菌之一。在本研究中,在Illumina HiSeq X系统上对其全基因组进行了测序,并与其他蘑菇基因组进行了比较。作为一种木腐菌,共注释了509种碳水化合物活性酶(CAZymes),以探索其在木材降解方面的潜在能力。该基因组中的糖苷水解酶(GH)家族基因比其他11个蘑菇基因组中的基因更为丰富。该基因组包含102个编码III、IV和V类乙醇脱氢酶的基因。基于来自15种蘑菇的562个直系单拷贝基因的进化分析表明,形成了伞菌纲的一个早期独立分支。通过遗传连锁分析,该的交配型位点位于连锁群8上。通过将基因组序列分析与遗传连锁图谱相结合,该的交配型位点位于scaffold45上,由α和β两个亚基组成。每个亚基由一对同源域交配型蛋白基因和组成。图谱显示在整个交配型位点存在保守的共线性,并且在和的β亚基附近存在镜像对称关系。本研究提出了通过该的联合生物加工生产生物乙醇的潜力。它将促进对木质纤维素降解系统的理解,并有助于更有效地转化用于蘑菇栽培的农业废弃物。它还将推动对其子实体发育和进化的研究。