Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA.
Department of Microbiology, The Forsyth Institute, Cambridge, MA, 02139, USA.
Microbiome. 2022 Sep 5;10(1):145. doi: 10.1186/s40168-022-01323-x.
The human mouth is a natural laboratory for studying how bacterial communities differ across habitats. Different bacteria colonize different surfaces in the mouth-teeth, tongue dorsum, and keratinized and non-keratinized epithelia-despite the short physical distance between these habitats and their connection through saliva. We sought to determine whether more tightly defined microhabitats might have more tightly defined sets of resident bacteria. A microhabitat may be characterized, for example, as the space adjacent to a particular species of bacterium. Corncob structures of dental plaque, consisting of coccoid bacteria bound to filaments of Corynebacterium cells, present an opportunity to analyze the community structure of one such well-defined microhabitat within a complex natural biofilm. Here, we investigate by fluorescence in situ hybridization and spectral imaging the composition of the cocci decorating the filaments.
The range of taxa observed in corncobs was limited to a small subset of the taxa present in dental plaque. Among four major groups of dental plaque streptococci, two were the major constituents of corncobs, including one that was the most abundant Streptococcus species in corncobs despite being relatively rare in dental plaque overall. Images showed both Streptococcus types in corncobs in all individual donors, suggesting that the taxa have different ecological roles or that mechanisms exist for stabilizing the persistence of functionally redundant taxa in the population. Direct taxon-taxon interactions were observed not only between the Streptococcus cells and the central corncob filament but also between Streptococcus cells and the limited subset of other plaque bacteria detected in the corncobs, indicating species ensembles involving these taxa as well.
The spatial organization we observed in corncobs suggests that each of the microbial participants can interact with multiple, albeit limited, potential partners, a feature that may encourage the long-term stability of the community. Additionally, our results suggest the general principle that a precisely defined microhabitat will be inhabited by a small and well-defined set of microbial taxa. Thus, our results are important for understanding the structure and organizing principles of natural biofilms and lay the groundwork for future work to modulate and control biofilms for human health. Video Abstract.
人类口腔是研究细菌群落如何在不同栖息地中存在差异的天然实验室。尽管这些栖息地之间的物理距离很短,并且通过唾液相连,但不同的细菌会在口腔中的不同表面定植——牙齿、舌背和角化及非角化上皮。我们试图确定是否更严格定义的微生境可能具有更严格定义的常驻细菌集。例如,微生境可以被定义为紧邻特定细菌物种的空间。牙菌斑中的玉米芯结构,由与棒状细胞丝结合的球菌组成,为分析复杂天然生物膜内这种定义明确的微生境的群落结构提供了机会。在这里,我们通过荧光原位杂交和光谱成像来研究装饰丝的球菌组成。
在玉米芯中观察到的分类群范围仅限于牙菌斑中存在的一小部分分类群。在牙菌斑中的四个主要链球菌群中,有两个是玉米芯的主要成分,其中一个是玉米芯中最丰富的链球菌物种,尽管它在牙菌斑中总体上相对较少。图像显示,所有个体供体的玉米芯中都存在这两种链球菌类型,这表明这些物种具有不同的生态作用,或者存在稳定功能冗余分类群在种群中持久性的机制。不仅观察到链球菌细胞与中心玉米芯丝之间,而且还观察到链球菌细胞与在玉米芯中检测到的有限的其他斑块细菌之间的直接分类群-分类群相互作用,这表明涉及这些分类群的物种集合也是如此。
我们在玉米芯中观察到的空间组织表明,每个微生物参与者都可以与多个,尽管有限,潜在的合作伙伴相互作用,这一特征可能会鼓励社区的长期稳定。此外,我们的结果表明了一个普遍的原则,即一个精确定义的微生境将由一小部分和定义明确的微生物分类群所占据。因此,我们的研究结果对于理解天然生物膜的结构和组织原则非常重要,并为未来的工作奠定了基础,以调节和控制生物膜,以促进人类健康。视频摘要。