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中华猕猴桃（猕猴桃科）亚种完整叶绿体基因组的特征分析

Characterization of the complete chloroplast genome of subsp. (Actinidiaceae).

作者信息

Zhang Lei, Zhang Ying, Jia Yun, Ding Fangbing, Wang Fengwei, Yu Gang, Wu Yongpeng

机构信息

Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi'an, China.

Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), Xi'an, China.

出版信息

Mitochondrial DNA B Resour. 2022 Aug 29;7(8):1548-1549. doi: 10.1080/23802359.2022.2110532. eCollection 2022.

DOI:10.1080/23802359.2022.2110532
PMID:36081829
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9448431/
Abstract

subsp. (Actinidiaceae) is an endemic medicinal species in China. Here, we first sequenced and characterized the complete chloroplast genome of subsp. . The chloroplast genome was 159,341 bp in length, containing a large single-copy of 88,351 bp and a small single-copy of 21,580 bp separated by a pair of identical inverted repeat regions of 24,705 bp each. A total of 131 genes were identified, including 84 protein-coding genes, 39 tRNA, and eight rRNA genes. The phylogenetic analysis of subsp. showed a relatively close relationship with subsp. .

摘要

亚种（猕猴桃科）是中国特有的药用物种。在此，我们首次对亚种的完整叶绿体基因组进行了测序和特征分析。叶绿体基因组长度为159,341 bp，包含一个88,351 bp的大单拷贝区和一个21,580 bp的小单拷贝区，由一对各为24,705 bp的相同反向重复区域隔开。共鉴定出131个基因，包括84个蛋白质编码基因、39个tRNA和8个rRNA基因。对亚种的系统发育分析表明，它与亚种关系相对密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca98/9448431/b3aa9c4b6cc4/TMDN_A_2110532_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca98/9448431/b3aa9c4b6cc4/TMDN_A_2110532_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca98/9448431/b3aa9c4b6cc4/TMDN_A_2110532_F0001_B.jpg

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Mitochondrial DNA B Resour. 2019 Jul 11;4(2):2195-2196. doi: 10.1080/23802359.2019.1623129.
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CPGAVAS2, an integrated plastome sequence annotator and analyzer.CPGAVAS2，一个集成的质体基因组序列注释和分析器。
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
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Complete Chloroplast Genome Sequence of Decaisnea insignis: Genome Organization, Genomic Resources and Comparative Analysis.八角枫 complete 叶绿体基因组序列：基因组组织、基因组资源与比较分析。
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