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（竹亚科）的完整叶绿体基因组序列

Complete chloroplast genome sequence of (Arundinarodae).

作者信息

Fan Lili, Zhang Yangyang, Tarin Muhammad Waqqas Khan, He Tianyou, Rong Jundong, Zheng Yushan

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, PR China.

College of Landscape, Fujian Agriculture and Forestry University, Fuzhou, PR China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 1;5(3):2237-2238. doi: 10.1080/23802359.2020.1768939. eCollection 2020.

DOI:10.1080/23802359.2020.1768939
PMID:33366988
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7510662/
Abstract

is native to Guizhou Province, China, and grows at an altitude of 260-320 m. It can be used as a raw material for weaving and papermaking. In the current study, the complete chloroplast (cp) genome of was sequenced and is reported for the first time. The complete cp sequence was 139,504 bp, include large single-copy (LSC), small single-copy (SSC), and a pair of invert repeats (IR) region of 83,103 bp, 12,813 bp, and 21,793 bp, respectively. Besides, the plastid genome comprised a total of 132 genes, including protein-coding, tRNA, and rRNA genes as 85, 39, and 8 genes, respectively. Phylogenetic analysis based on 28 cp genomes reveals that is closely associated with in Arundinarodae.

摘要

原产于中国贵州省，生长在海拔260 - 320米处。它可用作编织和造纸的原材料。在当前研究中，首次对其完整叶绿体（cp）基因组进行了测序并报道。完整的cp序列为139,504 bp，分别包括83,103 bp的大单拷贝（LSC）、12,813 bp的小单拷贝（SSC）和一对21,793 bp的反向重复（IR）区域。此外，质体基因组总共包含132个基因，其中蛋白质编码基因、tRNA基因和rRNA基因分别为85个、39个和8个。基于28个cp基因组的系统发育分析表明，在竹亚科中，它与[物种名未给出]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0862/7510662/ea39f6e9d8b0/TMDN_A_1768939_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0862/7510662/ea39f6e9d8b0/TMDN_A_1768939_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0862/7510662/ea39f6e9d8b0/TMDN_A_1768939_F0001_C.jpg

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Bandage: interactive visualization of de novo genome assemblies.绷带：从头基因组组装的交互式可视化
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