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紫花苜蓿中与叶片和茎发育相关的生长调节因子转录因子家族的全基因组鉴定

Genome-wide identification of growth-regulating factor transcription factor family related to leaf and stem development in alfalfa.

作者信息

Sun Yue, Li He, Wu Jiajing, Zhang Kangning, Tang Wei, Cong Lili, Xie Hongli, Wang Zeng-Yu, Chai Maofeng

机构信息

Key Laboratory of National Forestry and Grassland Administration on Grassland Resources and Ecology in the Yellow River Delta, College of Grassland Science, Qingdao Agricultural University, Qingdao, China.

出版信息

Front Plant Sci. 2022 Aug 23;13:964604. doi: 10.3389/fpls.2022.964604. eCollection 2022.

Abstract

Growth-regulating factors (GRFs) play crucial roles in plant growth and stress response. To date, there have been no reports of the analysis and identification of the GRF transcription factor family in alfalfa. In this study, we identified 27 GRF family members from alfalfa ( L.) "Xinjiang Daye", and analyzed their physicochemical properties. Based on phylogenetic analysis, these were divided into five subgroups, each with a similar gene structure and conserved motifs. genes are distributed on 23 chromosomes, and all contain QLQ and WRC conserved domains. The results of the collinearity analysis showed that all are involved in gene duplication, including multiple whole-genome duplication or segmental duplication and a set of tandem duplication, indicating that large-scale duplication is important for the expansion of the GRF family in alfalfa. Several hormone-related and stress-related -acting elements have been found in the promoter regions of . Some were highly expressed in young leaves and stems, and their expression decreased during development. In addition, the leaf size of different varieties was found to vary, and to , to , and to were differentially expressed in large and small leaf alfalfa varieties, suggesting that they are critical in the regulation of leaf size. The results of this study can benefit further exploration of the regulatory functions of in growth and development, and can identify candidate genes that control leaf size development.

摘要

生长调节因子(GRFs)在植物生长和胁迫响应中发挥着关键作用。迄今为止,尚未有关于苜蓿中GRF转录因子家族分析与鉴定的报道。在本研究中,我们从苜蓿(Medicago sativa L.)“新疆大叶”中鉴定出27个GRF家族成员,并分析了它们的理化性质。基于系统发育分析,这些成员被分为五个亚组,每个亚组具有相似的基因结构和保守基序。这些基因分布在23条染色体上,并且都包含QLQ和WRC保守结构域。共线性分析结果表明,所有这些基因都参与了基因复制,包括多个全基因组复制或片段复制以及一组串联复制,这表明大规模复制对苜蓿中GRF家族的扩展很重要。在这些基因的启动子区域发现了几个与激素相关和胁迫相关的顺式作用元件。一些基因在幼叶和茎中高表达,并且它们的表达在发育过程中下降。此外,发现不同品种的叶片大小有所不同,并且在大叶和小叶苜蓿品种中,MsGRF1至MsGRF3、MsGRF9至MsGRF11以及MsGRF17至MsGRF19差异表达,这表明它们在叶片大小调控中至关重要。本研究结果有助于进一步探索GRFs在生长发育中的调控功能,并可鉴定出控制叶片大小发育的候选基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72bd/9445573/08476c08c4bc/fpls-13-964604-g001.jpg

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