• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于生物信息学分析的原发性骨质疏松症骨髓间充质干细胞铁死亡关键基因的鉴定和验证。

Identification and validation of ferroptosis key genes in bone mesenchymal stromal cells of primary osteoporosis based on bioinformatics analysis.

机构信息

Department of Orthopedics, The First Affiliated Hospital of Soochow University, Suzhou, China.

Department of Orthopedics, Changshu Hospital Affiliated to Soochow University, First People's Hospital of Changshu City, Changshu, China.

出版信息

Front Endocrinol (Lausanne). 2022 Aug 25;13:980867. doi: 10.3389/fendo.2022.980867. eCollection 2022.

DOI:10.3389/fendo.2022.980867
PMID:36093072
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9452779/
Abstract

Primary osteoporosis has long been underdiagnosed and undertreated. Currently, ferroptosis may be a promising research direction in the prevention and treatment of primary osteoporosis. However, the specific mechanism of ferroptosis in primary osteoporosis remains a mystery. Differentially expressed genes (DEGs) were identified in bone mesenchymal stromal cells (BMSCs) of primary osteoporosis and heathy patients from the GEO databases with the help of bioinformatics analysis. Then, we intersected these DEGs with the ferroptosis dataset and obtained 80 Ferr-DEGs. Several bioinformatics algorithms (PCA, RLE, Limma, BC, MCC, etc.) were adopted to integrate the results. Additionally, we explored the potential functional roles of the Ferr-DEGs GO and KEGG. Protein-protein interactions (PPI) were used to predict potential interactive networks. Finally, 80 Ferr-DEGs and 5 key Ferr-DEGs were calculated. The 5 key Ferr-DEGs were further verified in the OVX mouse model. In conclusion, through a variety of bioinformatics methods, our research successfully identified 5 key Ferr-DEGs associated with primary osteoporosis and ferroptosis, namely, sirtuin 1(), heat shock protein family A () member 5 (), mechanistic target of rapamycin kinase (), hypoxia inducible factor 1 subunit alpha () and beclin 1 (), which were verified in an animal model.

摘要

原发性骨质疏松症长期以来一直被漏诊和治疗不足。目前,铁死亡可能是原发性骨质疏松症防治的一个有前途的研究方向。然而,原发性骨质疏松症中铁死亡的确切机制仍是一个谜。本研究借助生物信息学分析,从 GEO 数据库中鉴定出原发性骨质疏松症和健康患者的骨髓间充质基质细胞(BMSCs)中的差异表达基因(DEGs)。然后,我们将这些 DEGs 与铁死亡数据集相交,获得了 80 个 Ferr-DEGs。采用了几种生物信息学算法(PCA、RLE、Limma、BC、MCC 等)对结果进行整合。此外,我们还探讨了 Ferr-DEGs 的潜在功能作用,进行了 GO 和 KEGG 分析。使用蛋白质-蛋白质相互作用(PPI)来预测潜在的相互作用网络。最后,计算了 80 个 Ferr-DEGs 和 5 个关键 Ferr-DEGs。进一步在 OVX 小鼠模型中验证了 5 个关键 Ferr-DEGs。总之,通过多种生物信息学方法,我们的研究成功鉴定出与原发性骨质疏松症和铁死亡相关的 5 个关键 Ferr-DEGs,即沉默调节蛋白 1()、热休克蛋白家族 A()成员 5()、雷帕霉素靶蛋白激酶()、缺氧诱导因子 1 亚基α()和自噬相关蛋白 1(),在动物模型中得到了验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/a4a146b565be/fendo-13-980867-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/94a63b225f08/fendo-13-980867-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/fae1b6d53cda/fendo-13-980867-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/09acaaf1cfa7/fendo-13-980867-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/9668ace92c53/fendo-13-980867-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/b46ae781b99d/fendo-13-980867-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/048ab2949fc1/fendo-13-980867-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/0a8786684903/fendo-13-980867-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/c9ce464103db/fendo-13-980867-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/a4a146b565be/fendo-13-980867-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/94a63b225f08/fendo-13-980867-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/fae1b6d53cda/fendo-13-980867-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/09acaaf1cfa7/fendo-13-980867-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/9668ace92c53/fendo-13-980867-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/b46ae781b99d/fendo-13-980867-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/048ab2949fc1/fendo-13-980867-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/0a8786684903/fendo-13-980867-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/c9ce464103db/fendo-13-980867-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a762/9452779/a4a146b565be/fendo-13-980867-g009.jpg

相似文献

1
Identification and validation of ferroptosis key genes in bone mesenchymal stromal cells of primary osteoporosis based on bioinformatics analysis.基于生物信息学分析的原发性骨质疏松症骨髓间充质干细胞铁死亡关键基因的鉴定和验证。
Front Endocrinol (Lausanne). 2022 Aug 25;13:980867. doi: 10.3389/fendo.2022.980867. eCollection 2022.
2
Identification of osteoporosis ferroptosis-related markers and potential therapeutic compounds based on bioinformatics methods and molecular docking technology.基于生物信息学方法和分子对接技术鉴定骨质疏松症铁死亡相关标志物和潜在治疗化合物。
BMC Med Genomics. 2024 Apr 22;17(1):99. doi: 10.1186/s12920-024-01872-0.
3
Analysis and Validation of Differentially Expressed Ferroptosis-Related Genes in Regorafenib-Induced Cardiotoxicity.分析和验证regorafenib 诱导心脏毒性中差异表达的铁死亡相关基因。
Oxid Med Cell Longev. 2022 Sep 26;2022:2513263. doi: 10.1155/2022/2513263. eCollection 2022.
4
Expression profiles and functions of ferroptosis-related genes in the placental tissue samples of early- and late-onset preeclampsia patients.早发型和晚发型子痫前期患者胎盘组织样本中与铁死亡相关基因的表达谱及功能。
BMC Pregnancy Childbirth. 2022 Jan 31;22(1):87. doi: 10.1186/s12884-022-04423-6.
5
Bioinformatics Analysis of Molecular Interactions between Endoplasmic Reticulum Stress and Ferroptosis under Stress Exposure.应激暴露下内质网应激与铁死亡分子相互作用的生物信息学分析。
Anal Cell Pathol (Amst). 2023 Mar 30;2023:9979291. doi: 10.1155/2023/9979291. eCollection 2023.
6
Identification and validation of ferroptosis-related hub genes in obstructive sleep apnea syndrome.阻塞性睡眠呼吸暂停综合征中铁死亡相关枢纽基因的鉴定与验证
Front Neurol. 2023 Mar 2;14:1130378. doi: 10.3389/fneur.2023.1130378. eCollection 2023.
7
Bioinformatics analysis of ferroptosis in frozen shoulder.基于生物信息学的冻结肩中铁死亡相关分析。
BMC Med Genomics. 2024 Sep 27;17(1):234. doi: 10.1186/s12920-024-02011-5.
8
Identification of Ferroptosis-Related Hub Genes and Their Association with Immune Infiltration in Chronic Obstructive Pulmonary Disease by Bioinformatics Analysis.基于生物信息学分析鉴定慢性阻塞性肺疾病中与铁死亡相关的枢纽基因及其与免疫浸润的关系。
Int J Chron Obstruct Pulmon Dis. 2022 May 24;17:1219-1236. doi: 10.2147/COPD.S348569. eCollection 2022.
9
Identification of Potential Ferroptosis Key Genes in the Pathogenesis of Lumbosacral Spinal Root Avulsion by RNA Sequencing and Bioinformatics Analysis.通过RNA测序和生物信息学分析鉴定腰骶神经根撕脱发病机制中潜在的铁死亡关键基因
Front Mol Biosci. 2022 Aug 5;9:902607. doi: 10.3389/fmolb.2022.902607. eCollection 2022.
10
Identification of Drug Targets and Agents Associated with Ferroptosis-related Osteoporosis through Integrated Network Pharmacology and Molecular Docking Technology.通过整合网络药理学和分子对接技术鉴定与铁死亡相关骨质疏松症相关的药物靶点和药物。
Curr Pharm Des. 2024;30(14):1103-1114. doi: 10.2174/0113816128288225240318045050.

引用本文的文献

1
Atf3 Promotes Spinal Cord Injury by Exacerbating Neuronal Oxidative Stress and Inflammation via the NF-B Signaling Pathway.激活转录因子3通过核因子-κB信号通路加剧神经元氧化应激和炎症反应,从而促进脊髓损伤。
Int J Genomics. 2025 Aug 11;2025:1027388. doi: 10.1155/ijog/1027388. eCollection 2025.
2
Identification of senescence-related biomarkers for osteoporosis based on microarray analysis, Mendelian randomization, and experimental validation.基于微阵列分析、孟德尔随机化和实验验证的骨质疏松症衰老相关生物标志物的鉴定
Mamm Genome. 2025 May 24. doi: 10.1007/s00335-025-10116-0.
3
Exploring the Relationship Between 91 Inflammatory Cytokines and IgA Nephropathy Using a Two-Sample Mendelian Randomization Study and the Gene Expression Omnibus Database.

本文引用的文献

1
Canonical Wnt signaling works downstream of iron overload to prevent ferroptosis from damaging osteoblast differentiation.经典 Wnt 信号通路在铁过载的下游发挥作用,防止铁死亡损害成骨细胞分化。
Free Radic Biol Med. 2022 Aug 1;188:337-350. doi: 10.1016/j.freeradbiomed.2022.06.236. Epub 2022 Jun 23.
2
TET2 regulates osteoclastogenesis by modulating autophagy in OVX-induced bone loss.TET2 通过调节自噬来调节破骨细胞生成,从而调控去卵巢诱导的骨丢失。
Autophagy. 2022 Dec;18(12):2817-2829. doi: 10.1080/15548627.2022.2048432. Epub 2022 Mar 24.
3
Ferroptosis: A New Regulatory Mechanism in Osteoporosis.
利用两样本孟德尔随机化研究和基因表达综合数据库探索91种炎性细胞因子与IgA肾病之间的关系。
Mediators Inflamm. 2025 Apr 26;2025:5142090. doi: 10.1155/mi/5142090. eCollection 2025.
4
Integrative genomic analysis and diagnostic modeling of osteoporosis: unraveling the interplay of autophagy, osteogenesis, adipogenesis, and immune infiltration.骨质疏松症的综合基因组分析与诊断模型:揭示自噬、成骨、脂肪生成和免疫浸润之间的相互作用
Front Med (Lausanne). 2025 Apr 17;12:1544390. doi: 10.3389/fmed.2025.1544390. eCollection 2025.
5
Potential role of SIRT1 in cell ferroptosis.SIRT1在细胞铁死亡中的潜在作用。
Front Cell Dev Biol. 2025 Mar 5;13:1525294. doi: 10.3389/fcell.2025.1525294. eCollection 2025.
6
[Mechanism of sodium valproate in inhibiting ferroptosis of bone marrow mesenchymal stem cells via the adenosine monophosphate-activated protein kinase/Sirtuin 1 axis].[丙戊酸钠通过腺苷单磷酸激活的蛋白激酶/沉默调节蛋白1轴抑制骨髓间充质干细胞铁死亡的机制]
Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi. 2025 Feb 15;39(2):215-223. doi: 10.7507/1002-1892.202411089.
7
Targeting ferroptosis: opportunities and challenges of mesenchymal stem cell therapy for type 1 diabetes mellitus.靶向铁死亡:间充质干细胞治疗1型糖尿病的机遇与挑战
Stem Cell Res Ther. 2025 Feb 4;16(1):47. doi: 10.1186/s13287-025-04188-7.
8
Targeting ferroptosis to enhance the efficacy of mesenchymal stem cell-based treatments for intervertebral disc degeneration.靶向铁死亡以增强基于间充质干细胞的椎间盘退变治疗效果
Int J Biol Sci. 2025 Jan 20;21(3):1222-1241. doi: 10.7150/ijbs.107021. eCollection 2025.
9
The Potential Regulatory Role of Ferroptosis in Orthodontically Induced Inflammatory Root Resorption.铁死亡在正畸诱导性炎性牙根吸收中的潜在调控作用
Int J Mol Sci. 2024 Dec 19;25(24):13617. doi: 10.3390/ijms252413617.
10
A two-pronged approach to inhibit ferroptosis of MSCs caused by the iron overload in postmenopausal osteoporosis and promote osseointegration of titanium implant.一种双管齐下的方法,可抑制绝经后骨质疏松症中铁过载引起的间充质干细胞铁死亡,并促进钛植入物的骨整合。
Bioact Mater. 2024 Jul 25;41:336-354. doi: 10.1016/j.bioactmat.2024.07.024. eCollection 2024 Nov.
铁死亡:骨质疏松症的新调控机制。
Oxid Med Cell Longev. 2022 Jan 17;2022:2634431. doi: 10.1155/2022/2634431. eCollection 2022.
4
Ferroptosis and Its Potential Role in Metabolic Diseases: A Curse or Revitalization?铁死亡及其在代谢性疾病中的潜在作用:是祸还是福?
Front Cell Dev Biol. 2021 Jul 9;9:701788. doi: 10.3389/fcell.2021.701788. eCollection 2021.
5
Hypoxia inhibits RANKL-induced ferritinophagy and protects osteoclasts from ferroptosis.缺氧抑制 RANKL 诱导的铁蛋白自噬,保护破骨细胞免于铁死亡。
Free Radic Biol Med. 2021 Jun;169:271-282. doi: 10.1016/j.freeradbiomed.2021.04.027. Epub 2021 Apr 22.
6
Relevance of the Pyroptosis-Related Inflammasome Pathway in the Pathogenesis of Diabetic Kidney Disease.焦亡相关炎性小体通路在糖尿病肾病发病机制中的相关性。
Front Immunol. 2021 Feb 22;12:603416. doi: 10.3389/fimmu.2021.603416. eCollection 2021.
7
Ferroptosis Enhanced Diabetic Renal Tubular Injury HIF-1α/HO-1 Pathway in db/db Mice.铁死亡增强糖尿病肾病肾小管损伤 HIF-1α/HO-1 通路在 db/db 小鼠中。
Front Endocrinol (Lausanne). 2021 Feb 18;12:626390. doi: 10.3389/fendo.2021.626390. eCollection 2021.
8
Exosomes derived from vascular endothelial cells antagonize glucocorticoid-induced osteoporosis by inhibiting ferritinophagy with resultant limited ferroptosis of osteoblasts.血管内皮细胞来源的外泌体通过抑制铁蛋白自噬从而抑制成骨细胞发生有限的铁死亡,拮抗糖皮质激素诱导的骨质疏松症。
J Cell Physiol. 2021 Sep;236(9):6691-6705. doi: 10.1002/jcp.30331. Epub 2021 Feb 16.
9
Legumain promotes tubular ferroptosis by facilitating chaperone-mediated autophagy of GPX4 in AKI.Legumain 通过促进 AKI 中 GPX4 的伴侣介导自噬促进管状铁死亡。
Cell Death Dis. 2021 Jan 11;12(1):65. doi: 10.1038/s41419-020-03362-4.
10
Chemically Induced Models of Parkinson's Disease: History and Perspectives for the Involvement of Ferroptosis.化学诱导的帕金森病模型:铁死亡参与的历史与展望
Front Cell Neurosci. 2020 Dec 23;14:581191. doi: 10.3389/fncel.2020.581191. eCollection 2020.