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CRISPR/Cas9、Cas12、Cas13、Cas14 蛋白用于基因组工程的机制及应用综述

A Review on the Mechanism and Applications of CRISPR/Cas9/Cas12/Cas13/Cas14 Proteins Utilized for Genome Engineering.

机构信息

Department of Biosciences, Rajagiri College of Social Sciences, 683 104, Cochin, Kerala, India.

出版信息

Mol Biotechnol. 2023 Mar;65(3):311-325. doi: 10.1007/s12033-022-00567-0. Epub 2022 Sep 27.

DOI:10.1007/s12033-022-00567-0
PMID:36163606
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9512960/
Abstract

The clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein (CRISPR/Cas) system has altered life science research offering enormous options in manipulating, detecting, imaging, and annotating specific DNA or RNA sequences of diverse organisms. This system incorporates fragments of foreign DNA (spacers) into CRISPR cassettes, which are further transcribed into the CRISPR arrays and then processed to make guide RNA (gRNA). The CRISPR arrays are genes that encode Cas proteins. Cas proteins provide the enzymatic machinery required for acquiring new spacers targeting invading elements. Due to programmable sequence specificity, numerous Cas proteins such as Cas9, Cas12, Cas13, and Cas14 have been exploited to develop new tools for genome engineering. Cas variants stimulated genetic research and propelled the CRISPR/Cas tool for manipulating and editing nucleic acid sequences of living cells of diverse organisms. This review aims to provide detail on two classes (class 1 and 2) of the CRISPR/Cas system, and the mechanisms of all Cas proteins, including Cas12, Cas13, and Cas14 discovered so far. In addition, we also discuss the pros and cons and recent applications of various Cas proteins in diverse fields, including those used to detect viruses like severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). This review enables the researcher to gain knowledge on various Cas proteins and their applications, which have the potential to be used in next-generation precise genome engineering.

摘要

成簇规律间隔短回文重复序列 (CRISPR) 和 CRISPR 相关蛋白 (CRISPR/Cas) 系统改变了生命科学研究,为操纵、检测、成像和注释不同生物体的特定 DNA 或 RNA 序列提供了巨大的选择。该系统将外源 DNA 片段(间隔序列)整合到 CRISPR 盒中,然后进一步转录成 CRISPR 数组,然后进行加工以产生指导 RNA (gRNA)。CRISPR 数组是编码 Cas 蛋白的基因。Cas 蛋白提供了获取靶向入侵元件的新间隔序列所需的酶学机制。由于可编程的序列特异性,已经开发了许多 Cas 蛋白,如 Cas9、Cas12、Cas13 和 Cas14,用于开发用于基因组工程的新工具。Cas 变体刺激了遗传研究,并推动了 CRISPR/Cas 工具用于操纵和编辑不同生物体的活细胞中的核酸序列。

本综述旨在详细介绍 CRISPR/Cas 系统的两类(1 类和 2 类)和迄今为止发现的所有 Cas 蛋白(Cas12、Cas13 和 Cas14)的机制。此外,我们还讨论了各种 Cas 蛋白在不同领域的优缺点和最新应用,包括用于检测病毒(如严重急性呼吸综合征冠状病毒-2 (SARS-CoV-2))的应用。

本综述使研究人员能够了解各种 Cas 蛋白及其应用,这些 Cas 蛋白有可能用于下一代精确基因组工程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/115d4f127f06/12033_2022_567_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/62f4c9ef1d26/12033_2022_567_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/c8b423e3ae3b/12033_2022_567_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/f96f808d412f/12033_2022_567_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/cfecea485a5c/12033_2022_567_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/48fb5b34eeff/12033_2022_567_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/115d4f127f06/12033_2022_567_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/62f4c9ef1d26/12033_2022_567_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/fad8a95925b2/12033_2022_567_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/6b2a0ec7f28c/12033_2022_567_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/c8b423e3ae3b/12033_2022_567_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/f96f808d412f/12033_2022_567_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/cfecea485a5c/12033_2022_567_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/48fb5b34eeff/12033_2022_567_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a04d/9512960/115d4f127f06/12033_2022_567_Fig8_HTML.jpg

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