Direct observation of stepping rotation of V-ATPase reveals rigid component in coupling between V and V motors.

V-ATPases are rotary motor proteins that convert the chemical energy of ATP into the electrochemical potential of ions across cell membranes. V-ATPases consist of two rotary motors, V and V, and V-ATPase (EhVV) actively transports Na in V (EhV) by using torque generated by ATP hydrolysis in V (EhV). Here, we observed ATP-driven stepping rotation of detergent-solubilized EhVV wild-type, aE634A, and BR350K mutants under various Na and ATP concentrations ([Na] and [ATP], respectively) by using a 40-nm gold nanoparticle as a low-load probe. When [Na] was low and [ATP] was high, under the condition that only Na binding to EhV is rate limiting, wild-type and aE634A exhibited 10 pausing positions reflecting 10-fold symmetry of the EhV rotor and almost no backward steps. Duration time before the forward steps was inversely proportional to [Na], confirming that Na binding triggers the steps. When both [ATP] and [Na] were low, under the condition that both Na and ATP bindings are rate limiting, aE634A exhibited 13 pausing positions reflecting 10- and 3-fold symmetries of EhV and EhV, respectively. The distribution of duration time before the forward step was fitted well by the sum of two exponential decay functions with distinct time constants. Furthermore, occasional backward steps smaller than 36° were observed. Small backward steps were also observed during three long ATP cleavage pauses of BR350K. These results indicate that EhV and EhV do not share pausing positions, Na and ATP bindings occur at different angles, and the coupling between EhV and EhV has a rigid component.