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可变剪接的生理学

The physiology of alternative splicing.

作者信息

Marasco Luciano E, Kornblihtt Alberto R

机构信息

Universidad de Buenos Aires (UBA), Facultad de Ciencias Exactas y Naturales, Departamento de Fisiología, Biología Moleculary Celular and CONICET-UBA, Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), Buenos Aires, Argentina.

Sir William Dunn School of Pathology, University of Oxford, Oxford, UK.

出版信息

Nat Rev Mol Cell Biol. 2023 Apr;24(4):242-254. doi: 10.1038/s41580-022-00545-z. Epub 2022 Oct 13.

DOI:10.1038/s41580-022-00545-z
PMID:36229538
Abstract

Alternative splicing is a substantial contributor to the high complexity of transcriptomes of multicellular eukaryotes. In this Review, we discuss the accumulated evidence that most of this complexity is reflected at the protein level and fundamentally shapes the physiology and pathology of organisms. This notion is supported not only by genome-wide analyses but, mainly, by detailed studies showing that global and gene-specific modulations of alternative splicing regulate highly diverse processes such as tissue-specific and species-specific cell differentiation, thermal regulation, neuron self-avoidance, infrared sensing, the Warburg effect, maintenance of telomere length, cancer and autism spectrum disorders (ASD). We also discuss how mastering the control of alternative splicing paved the way to clinically approved therapies for hereditary diseases.

摘要

可变剪接是多细胞真核生物转录组高度复杂性的一个重要促成因素。在本综述中,我们讨论了越来越多的证据,表明这种复杂性大多在蛋白质水平上得以体现,并从根本上塑造了生物体的生理和病理状态。这一观点不仅得到了全基因组分析的支持,而且主要是通过详细研究得到证实,这些研究表明可变剪接的全局和基因特异性调控参与了多种不同的过程,如组织特异性和物种特异性细胞分化、体温调节、神经元自我回避、红外感应、瓦伯格效应、端粒长度维持、癌症和自闭症谱系障碍(ASD)。我们还讨论了掌握可变剪接的控制如何为遗传性疾病的临床批准疗法铺平了道路。

相似文献

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The physiology of alternative splicing.可变剪接的生理学
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2
Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism.自闭症中lncRNA、剪接和区域基因表达模式的全基因组变化。
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3
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Regulation of Neuronal Differentiation, Function, and Plasticity by Alternative Splicing.通过选择性剪接调控神经元的分化、功能和可塑性。
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Stem cells as a good tool to investigate dysregulated biological systems in autism spectrum disorders.干细胞作为研究自闭症谱系障碍中失调生物系统的良好工具。
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10
Functional consequences of developmentally regulated alternative splicing.发育调控的可变剪接的功能后果。
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Exp Biol Med (Maywood). 2025 Aug 29;250:10430. doi: 10.3389/ebm.2025.10430. eCollection 2025.
2
QKI ensures splicing fidelity during cardiogenesis by engaging the U6 tri-snRNP to activate splicing at weak 5' splice sites.QKI通过与U6三小核核糖核蛋白复合体结合,在心脏发生过程中确保剪接保真度,从而激活弱5'剪接位点的剪接。
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本文引用的文献

1
Alternative splicing as a source of phenotypic diversity.可变剪接作为表型多样性的一个来源。
Nat Rev Genet. 2022 Nov;23(11):697-710. doi: 10.1038/s41576-022-00514-4. Epub 2022 Jul 12.
2
Counteracting chromatin effects of a splicing-correcting antisense oligonucleotide improves its therapeutic efficacy in spinal muscular atrophy.反义寡核苷酸纠正剪接的染色质效应可提高其在脊髓性肌萎缩症中的治疗效果。
Cell. 2022 Jun 9;185(12):2057-2070.e15. doi: 10.1016/j.cell.2022.04.031.
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How clustered protocadherin binding specificity is tuned for neuronal self-/nonself-recognition.
剪接体相关微小RNA在神经癌细胞中的核功能
Int J Mol Sci. 2025 Aug 28;26(17):8349. doi: 10.3390/ijms26178349.
4
Computational Splicing Analysis of Transcriptomic Data Reveals Sulforaphane Modulation of Alternative mRNA Splicing of DNA Repair Genes in Differentiated SH-SY5Y Neurons.转录组数据的计算剪接分析揭示了萝卜硫素对分化的SH-SY5Y神经元中DNA修复基因可变mRNA剪接的调节作用。
Int J Mol Sci. 2025 Aug 23;26(17):8187. doi: 10.3390/ijms26178187.
5
Alternative splicing drives a dynamic transcriptomic response during programmed cell death.可变剪接在程序性细胞死亡过程中驱动动态转录组反应。
Microb Cell. 2025 Aug 26;12:231-241. doi: 10.15698/mic2025.08.858. eCollection 2025.
6
Genetic variants of LncRNA associated with splicing regulation and their impact on ovarian cancer development.与剪接调控相关的长链非编码RNA的遗传变异及其对卵巢癌发展的影响。
Funct Integr Genomics. 2025 Sep 2;25(1):185. doi: 10.1007/s10142-025-01687-x.
7
Integrating Full-Length and Second-Generation Transcriptomes to Elucidate the ApNPV-Induced Transcriptional Reprogramming in Midgut.整合全长转录组和第二代转录组以阐明苜蓿银纹夜蛾核多角体病毒诱导的中肠转录重编程
Insects. 2025 Jul 31;16(8):792. doi: 10.3390/insects16080792.
8
Sex-dependent epigenetic disruption of YY1 binding by prenatal BPA exposure downregulates Matr3 and alters Agap1 splicing in the offspring hippocampus.产前双酚A暴露导致的YY1结合的性别依赖性表观遗传破坏会下调后代海马体中的Matr3并改变Agap1的剪接。
Biol Sex Differ. 2025 Aug 11;16(1):63. doi: 10.1186/s13293-025-00744-1.
9
SRSF12 is a primate-specific splicing factor that induces a tissue-specific gene expression program.SRSF12是一种灵长类动物特有的剪接因子,可诱导组织特异性基因表达程序。
bioRxiv. 2025 Jul 27:2025.07.25.666902. doi: 10.1101/2025.07.25.666902.
10
Disrupted Alternative Splicing of RAB11FIP3 Contributes to Diabetic Foot Ulcer Dysfunction.RAB11FIP3可变剪接异常导致糖尿病足溃疡功能障碍。
J Cell Mol Med. 2025 Aug;29(15):e70663. doi: 10.1111/jcmm.70663.
成簇原钙黏蛋白的结合特异性是如何针对神经元的自我/非自我识别进行调节的。
Elife. 2022 Mar 7;11:e72416. doi: 10.7554/eLife.72416.
4
Histone marks regulate the epithelial-to-mesenchymal transition via alternative splicing.组蛋白标记物通过选择性剪接调控上皮-间充质转化。
Cell Rep. 2022 Feb 15;38(7):110357. doi: 10.1016/j.celrep.2022.110357.
5
Alternative Splicing in Myeloid Malignancies.髓系恶性肿瘤中的可变剪接
Biomedicines. 2021 Dec 6;9(12):1844. doi: 10.3390/biomedicines9121844.
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Assembly defects of human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia.人 tRNA 剪接内切酶的组装缺陷导致桥脑小脑发育不良中前 tRNA 加工受损。
Nat Commun. 2021 Sep 28;12(1):5610. doi: 10.1038/s41467-021-25870-3.
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Nucleo-cytoplasmic shuttling of splicing factor SRSF1 is required for development and cilia function.剪接因子 SRSF1 的核质穿梭对于发育和纤毛功能是必需的。
Elife. 2021 Aug 2;10:e65104. doi: 10.7554/eLife.65104.
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N Engl J Med. 2021 Jul 29;385(5):427-435. doi: 10.1056/NEJMoa2102047.
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Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved alternative splicing nonsense-mediated decay pathways.对翻译前 mRNP 的深度测序揭示了通过进化保守的选择性剪接无意义介导的衰变途径隐藏的通量。
Genome Biol. 2021 May 3;22(1):132. doi: 10.1186/s13059-021-02309-y.
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Exploring the Alternative Splicing of Long Noncoding RNAs.探索长链非编码 RNA 的可变剪接。
Trends Genet. 2021 Aug;37(8):695-698. doi: 10.1016/j.tig.2021.03.010. Epub 2021 Apr 21.