The aim of this work was to produce filaments of PLA/PBAT and NPK fertilizer adsorbed on organophilized bentonite intended for application in the prototyping of biodegradable agricultural artifacts in 3D printing, using the Fused Deposition Modeling (FDM) technique. This is the first time that we have reported this composite for a 3D printing approach. Systems containing PLA/PBAT, organobentonite and NPK were initially processed in an internal mixer and later extruded as filaments in a single-screw extruder. The prototypes were printed by FDM. Structural, morphological and thermal properties, as well as NPK releasing, were investigated. The results suggest that exfoliated and/or intercalated nanocomposites were obtained by the organoclay addition to the PLA/PBAT blend. The morphological analysis revealed a good surface quality of the impressions. Systems containing organobentonite released approximately 22% less fertilizer in 24 h compared to the systems without organobentonite. This difference is due to the higher concentration of nanoparticles that generate more barriers to the diffusion of NPK. The release data for these systems had a better fit to the kinetic model of Korsmeyer-Peppas. Thus, studied filaments have the potential to retard the release of fertilizer and are suitable for further development of structures for agricultural applications by FDM.