胰腺β细胞中心碳代谢和胰岛素分泌的动力学和数据驱动建模。
Kinetic and data-driven modeling of pancreatic β-cell central carbon metabolism and insulin secretion.
机构信息
Department of Biomedical Engineering, USC, Los Angeles, California, United States of America.
Mork Family Department of Chemical Engineering and Materials Science, USC, Los Angeles, California, United States of America.
出版信息
PLoS Comput Biol. 2022 Oct 17;18(10):e1010555. doi: 10.1371/journal.pcbi.1010555. eCollection 2022 Oct.
Pancreatic β-cells respond to increased extracellular glucose levels by initiating a metabolic shift. That change in metabolism is part of the process of glucose-stimulated insulin secretion and is of particular interest in the context of diabetes. However, we do not fully understand how the coordinated changes in metabolic pathways and metabolite products influence insulin secretion. In this work, we apply systems biology approaches to develop a detailed kinetic model of the intracellular central carbon metabolic pathways in pancreatic β-cells upon stimulation with high levels of glucose. The model is calibrated to published metabolomics datasets for the INS1 823/13 cell line, accurately capturing the measured metabolite fold-changes. We first employed the calibrated mechanistic model to estimate the stimulated cell's fluxome. We then used the predicted network fluxes in a data-driven approach to build a partial least squares regression model. By developing the combined kinetic and data-driven modeling framework, we gain insights into the link between β-cell metabolism and glucose-stimulated insulin secretion. The combined modeling framework was used to predict the effects of common anti-diabetic pharmacological interventions on metabolite levels, flux through the metabolic network, and insulin secretion. Our simulations reveal targets that can be modulated to enhance insulin secretion. The model is a promising tool to contextualize and extend the usefulness of metabolomics data and to predict dynamics and metabolite levels that are difficult to measure in vitro. In addition, the modeling framework can be applied to identify, explain, and assess novel and clinically-relevant interventions that may be particularly valuable in diabetes treatment.
胰腺 β 细胞通过启动代谢转变来响应细胞外葡萄糖水平的升高。这种代谢变化是葡萄糖刺激胰岛素分泌过程的一部分,在糖尿病的背景下尤其引人关注。然而,我们并不完全了解代谢途径和代谢物产物的协调变化如何影响胰岛素分泌。在这项工作中,我们应用系统生物学方法来开发一个详细的胰腺 β 细胞在高葡萄糖刺激下的细胞内中心碳代谢途径的动力学模型。该模型经过校准,以匹配 INS1 823/13 细胞系的已发表代谢组学数据集,准确捕捉到了测量的代谢物倍数变化。我们首先使用校准后的机械模型来估计受刺激细胞的通量组。然后,我们使用预测的网络通量在数据驱动的方法中构建偏最小二乘回归模型。通过开发联合动力学和数据驱动的建模框架,我们深入了解了 β 细胞代谢与葡萄糖刺激胰岛素分泌之间的联系。联合建模框架用于预测常见抗糖尿病药物干预对代谢物水平、代谢网络中通量和胰岛素分泌的影响。我们的模拟揭示了可以调节的靶点,以增强胰岛素分泌。该模型是一个很有前途的工具,可以将代谢组学数据置于上下文中并扩展其用途,并预测在体外难以测量的动力学和代谢物水平。此外,该建模框架可用于识别、解释和评估新的和临床上相关的干预措施,这些措施在糖尿病治疗中可能特别有价值。