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科学机器学习的兴起:关于将机理建模与机器学习相结合用于系统生物学的观点。

The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology.

作者信息

Noordijk Ben, Garcia Gomez Monica L, Ten Tusscher Kirsten H W J, de Ridder Dick, van Dijk Aalt D J, Smith Robert W

机构信息

Bioinformatics Group, Wageningen University and Research, Wageningen, Netherlands.

CropXR Institute, Utrecht, Netherlands.

出版信息

Front Syst Biol. 2024 Aug 2;4:1407994. doi: 10.3389/fsysb.2024.1407994. eCollection 2024.

Abstract

Both machine learning and mechanistic modelling approaches have been used independently with great success in systems biology. Machine learning excels in deriving statistical relationships and quantitative prediction from data, while mechanistic modelling is a powerful approach to capture knowledge and infer causal mechanisms underpinning biological phenomena. Importantly, the strengths of one are the weaknesses of the other, which suggests that substantial gains can be made by combining machine learning with mechanistic modelling, a field referred to as Scientific Machine Learning (SciML). In this review we discuss recent advances in combining these two approaches for systems biology, and point out future avenues for its application in the biological sciences.

摘要

机器学习和机理建模方法在系统生物学中都已被独立使用并取得了巨大成功。机器学习擅长从数据中推导统计关系和进行定量预测,而机理建模是一种强大的方法,用于获取知识并推断支撑生物现象的因果机制。重要的是,一种方法的优势正是另一种方法的劣势,这表明将机器学习与机理建模相结合(这一领域称为科学机器学习,SciML)可以带来显著的收益。在本综述中,我们讨论了将这两种方法结合用于系统生物学的最新进展,并指出了其在生物科学中应用的未来方向。

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