Archila Luisa Ricaurte, Smith Lindsey, Sihvo Hanna-Kaisa, Westerling-Bui Thomas, Koponen Ville, O'Sullivan Donnchadh M, Fernandez Maria Camila Cardenas, Alexander Erin E, Wang Yaohong, Sivasubramaniam Priyadharshini, Patil Ameya, Hopson Puanani E, Absah Imad, Ravi Karthik, Mounajjed Taofic, Pai Rish, Hagen Catherine, Hartley Christopher, Graham Rondell P, Moreira Roger K
Department of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN, USA.
Aiforia Technologies, Worcester, MA, USA.
J Pathol Inform. 2022 Sep 27;13:100144. doi: 10.1016/j.jpi.2022.100144. eCollection 2022.
In an attempt to provide quantitative, reproducible, and standardized analyses in cases of eosinophilic esophagitis (EoE), we have developed an artificial intelligence (AI) digital pathology model for the evaluation of histologic features in the EoE/esophageal eosinophilia spectrum. Here, we describe the development and technical validation of this novel AI tool.
A total of 10 726 objects and 56.2 mm of semantic segmentation areas were annotated on whole-slide images, utilizing a cloud-based, deep learning artificial intelligence platform (Aiforia Technologies, Helsinki, Finland). Our training set consisted of 40 carefully selected digitized esophageal biopsy slides which contained the full spectrum of changes typically seen in the setting of esophageal eosinophilia, ranging from normal mucosa to severe abnormalities with regard to each specific features included in our model. A subset of cases was reserved as independent "test sets" in order to assess the validity of the AI model outside the training set. Five specialized experienced gastrointestinal pathologists scored each feature blindly and independently of each other and of AI model results.
The performance of the AI model for all cell type features was similar/non-inferior to that of our group of GI pathologists (F1-scores: 94.5-94.8 for AI vs human and 92.6-96.0 for human vs human). Segmentation area features were rated for accuracy using the following scale: 1. "perfect or nearly perfect" (95%-100%, no significant errors), 2. "very good" (80%-95%, only minor errors), 3. "good" (70%-80%, significant errors but still captures the feature well), 4. "insufficient" (less than 70%, significant errors compromising feature recognition). Rating scores for tissue (1.01), spongiosis (1.15), basal layer (1.05), surface layer (1.04), lamina propria (1.15), and collagen (1.11) were in the "very good" to "perfect or nearly perfect" range, while degranulation (2.23) was rated between "good" and "very good".
Our newly developed AI-based tool showed an excellent performance (non-inferior to a group of experienced GI pathologists) for the recognition of various histologic features in the EoE/esophageal mucosal eosinophilia spectrum. This tool represents an important step in creating an accurate and reproducible method for semi-automated quantitative analysis to be used in the evaluation of esophageal biopsies in this clinical context.
为了在嗜酸性食管炎(EoE)病例中提供定量、可重复且标准化的分析,我们开发了一种人工智能(AI)数字病理模型,用于评估EoE/食管嗜酸性粒细胞增多症谱系中的组织学特征。在此,我们描述了这种新型AI工具的开发和技术验证。
利用基于云的深度学习人工智能平台(芬兰赫尔辛基的Aiforia Technologies),在全切片图像上共标注了10726个对象和56.2平方毫米的语义分割区域。我们的训练集由40张精心挑选的数字化食管活检切片组成,这些切片包含了食管嗜酸性粒细胞增多症中常见的各种变化,从正常黏膜到针对我们模型中包含的每个特定特征的严重异常。保留一部分病例作为独立的“测试集”,以评估AI模型在训练集之外的有效性。五位专业经验丰富的胃肠病理学家对每个特征进行了独立盲法评分,且评分过程与AI模型结果无关。
AI模型对所有细胞类型特征的表现与我们的胃肠病理学家团队相似/不逊色(F1分数:AI与人类的为94.5 - 94.8,人类与人类之间的为92.6 - 96.0)。使用以下量表对分割区域特征的准确性进行评分:1. “完美或近乎完美”(95% - 100%,无重大误差),2. “非常好”(80% - 95%,仅有小误差),3. “好”(70% - 80%,有重大误差但仍能很好地捕捉特征),4. “不足”(小于70%,重大误差影响特征识别)。组织(1.01)、海绵形成(1.15)、基底层(1.05)、表层(1.04)、固有层(1.15)和胶原蛋白(1.11)的评分在“非常好”到“完美或近乎完美”范围内,而脱颗粒(2.23)的评分在“好”和“非常好”之间。
我们新开发的基于AI的工具在识别EoE/食管黏膜嗜酸性粒细胞增多症谱系中的各种组织学特征方面表现出色(不逊色于一组经验丰富的胃肠病理学家)。该工具代表了创建一种准确且可重复的半自动化定量分析方法的重要一步,可用于在此临床背景下评估食管活检。