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sp. nov.,一种严格的化能自养、硫氧化细菌,从南海深海沉积物样本中分离得到。

sp. nov., an obligately chemolithoautotrophic, sulphur-oxidizing bacterium isolated from a deep-sea sediment sample from the South China Sea.

机构信息

School of Marine Sciences, China University of Geosciences, Beijing 100083, PR China.

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of PR China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, PR China.

出版信息

Int J Syst Evol Microbiol. 2022 Oct;72(10). doi: 10.1099/ijsem.0.005582.

Abstract

A novel marine bacterium, designated strain B2, was isolated from a deep-sea sediment sample collected from the South China Sea. Cells were observed to be Gram-stain negative, motile and rod shaped with a single polar flagellum. B2 could grow at 10-45 °C (optimum, 35 °C), pH 4.5-9.0 (optimum, pH 7.0) and in the presence of 1.0-8.0 % (w/v) NaCl (optimum, 3.0%). The isolate grew chemolithoautotrophically with sulphide, elemental sulphur and thiosulphate as electron donors, carbon dioxide as the sole carbon source, and molecular oxygen as the sole electron acceptor. Molecular hydrogen did not support growth. The predominant fatty acids of B2 were Cω7, C and Cω7. The results of phylogenetic analysis based on 16S rRNA gene sequence indicated that B2 represented a member of the genus , with the highest similarity to the 16S rRNA gene sequences of NW8N (95.9 %), SN118 (95.7 %), 1-1N (95.6 %) and GO25 (95.4 %). Sequence similarities to other members of the genus were less than 95.0 %. In addition, the average nucleotide identity (ANI) value and digital DNA-DNA hybridization (dDDH) estimate between B2 and NW8N were 73.0 and 23.7 %, respectively. The size of the complete genome of B2 is 22 61 034 bp, with a DNA G+C content of 36.0 mol %. On the basis of the phenotypic, phylogenetic and genomic data presented here, strain B2 represent a novel species of the genus , for which the name sp. nov. is proposed, with the type strain B2 (=MCCC 1A14515=KCTC 15852).

摘要

一株新型海洋细菌,菌株 B2,从南海深海沉积物样本中分离得到。细胞革兰氏染色阴性,运动,杆状,有一个单极鞭毛。B2 可在 10-45°C(最适温度 35°C)、pH4.5-9.0(最适 pH7.0)和 1.0-8.0%(w/v)NaCl(最适 3.0%)的条件下生长。该菌为化能自养菌,以硫化物、元素硫和硫代硫酸盐作为电子供体,二氧化碳作为唯一碳源,分子氧作为唯一电子受体进行生长。氢气不支持生长。B2 的主要脂肪酸为 Cω7、C16:0 和 Cω7。基于 16S rRNA 基因序列的系统发育分析结果表明,B2 代表一个属的成员,与 NW8N(95.9%)、SN118(95.7%)、1-1N(95.6%)和 GO25(95.4%)的 16S rRNA 基因序列最为相似。与属内其他成员的序列相似度均低于 95.0%。此外,B2 与 NW8N 的平均核苷酸同一性(ANI)值和数字 DNA-DNA 杂交(dDDH)估计值分别为 73.0%和 23.7%。B2 完整基因组大小为 2261034bp,GC 含量为 36.0mol%。基于表型、系统发育和基因组数据,菌株 B2 代表一个属的新种,命名为 sp. nov.,其模式菌株为 B2(=MCCC 1A14515=KCTC 15852)。

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