Department of Molecular and Cell Biology, University of Cape Town, Private Bag X3, Rondebosch, 7701 Cape Town, South Africa.
Department of Molecular and Cell Biology, University of Cape Town, Private Bag X3, Rondebosch, 7701 Cape Town, South Africa.
Syst Appl Microbiol. 2022 Nov;45(6):126373. doi: 10.1016/j.syapm.2022.126373. Epub 2022 Oct 9.
The type strains of all 33 species in the genus Kribbella were tested for growth on oxalate (OOC-COO) as sole carbon source. Media were initially formulated to contain sodium oxalate, but even a concentration as low as 7.5 mM oxalate prevented growth. A modified medium based on calcium oxalate was very successful in characterising oxalate utilisation by Kribbella strains (metabolism of oxalate by oxalotrophic bacteria results in visible zones of clearing around the growth streaks on the opaque plates). To assess the variability of oxalate utilisation in Kribbella species, we also tested eight non-type strains for their ability to use oxalate. Thirty of 33 type strains (90.9%) and six of eight non-type strains (75%) were able to use oxalate as a sole carbon source. Based on these results, we propose that oxalate would be an excellent carbon source for the selective isolation of Kribbella strains. Based on the oxalate-utilisation phenotype and analyses of the 19 publicly available Kribbella type-strain genome sequences, we propose a pathway for oxalate metabolism in Kribbella. This pathway is significantly different from those previously proposed for oxalate metabolism in other bacteria, involving the indirect catabolism of oxalate to formate. Formate production is proposed to be involved in energy generation and to be crucial for oxalate import via an oxalate:formate antiporter. To our knowledge, this is the first report of an oxalate:formate antiporter in an aerobic, Gram-positive bacterium.
对属内的 33 种 Kribbella 所有标准菌株进行了草酸盐(OOC-COO)作为唯一碳源的生长测试。最初的培养基配方中含有草酸钠,但即使草酸钠浓度低至 7.5mM 也会阻止生长。一种基于草酸钙的改良培养基非常成功地描述了 Kribbella 菌株对草酸盐的利用(草酸营养细菌代谢草酸盐会导致不透明平板上生长条纹周围出现可见的透明区域)。为了评估 Kribbella 物种中草酸盐利用的可变性,我们还测试了 8 株非标准菌株利用草酸盐的能力。33 株标准菌株中有 30 株(90.9%)和 8 株非标准菌株中的 6 株(75%)能够将草酸盐用作唯一碳源。基于这些结果,我们提出草酸盐将是选择性分离 Kribbella 菌株的极好碳源。基于草酸盐利用表型和 19 株公开可得的 Kribbella 标准菌株基因组序列的分析,我们提出了 Kribbella 中草酸盐代谢的途径。该途径与其他细菌中先前提出的草酸盐代谢途径明显不同,涉及草酸盐的间接分解代谢为甲酸。甲酸的产生被认为参与了能量生成,并且对于通过草酸盐:甲酸反向转运蛋白导入草酸盐至关重要。据我们所知,这是有氧革兰氏阳性菌中草酸盐:甲酸反向转运蛋白的首次报道。