Ahamada Rachid Nahdhoit, Doğruöz Güngör Nihal
Institute of Graduate Studies in Sciences, Istanbul University, 34134 Vezneciler Fatih, Istanbul, Turkey.
Department of Biology, Faculty of Science, Istanbul University, 34134 Vezneciler Fatih, Istanbul, Turkey.
Int Microbiol. 2023 May;26(2):179-190. doi: 10.1007/s10123-022-00287-0. Epub 2022 Nov 4.
Some of microorganisms identified in cave ecosystems have been reported to play a permanent and strategic role for maintaining life of these environments. Human entrance into caves can induce some changes of cave physicochemical parameters which ultimately impacts the living organisms. In these facts, for the first time, Morca Cave was explored in a purpose to evaluate the impacts that can be caused by the human activities on microbial diversity in a limited period of time. Morca is a karts cave located in the Taşeli Plateau in the Middle Taurus mountains in Turkey. The first entrance into this cave was in 2018, and expeditors reached to - 500 m. During the second expedition in 2019, a camp was established at the - 1040-m depth during 4 days. In order to evaluate the human impacts in a new explored cave, this camping depth is chosen to be our studied area because it was its first entrance. Before the installation and at the end of the camp, sediments and surface samples were taken from different points of the camp area and around. Sequencing of 16 s rRNA of each sample to isolate DNA by using the next-generation sequencing (NGS) method was performed. The profile of the microbial diversity before the camping revealed that the class Thermoplasmata was dominated the archaea group and Gammaproteobacteria and Alphaproteobacteria were the most dominant bacterial classes. After the camp, most studied sites were noted with a decrease of microbial diversity especially the previous cited classes strains. Bacteria belonging to Bacilli class have increased after the camp. Increase of bacteria that are belonging to Bacteroidia has also observed in the most active areas. This present study highlight how cave microbial diversity can respond to the human activities within a short period inside a closed cave. Furthermore, it may constitute a solid basis and support on the improvement of techniques for cave management and expedition planning for the conservation of cave nature.
据报道,在洞穴生态系统中发现的一些微生物对维持这些环境的生命起着永久性的战略作用。人类进入洞穴会引起洞穴物理化学参数的一些变化,最终影响生物。基于这些事实,首次对莫尔卡洞穴进行了探索,目的是评估人类活动在有限时间内对微生物多样性可能造成的影响。莫尔卡是一个位于土耳其中金牛座山脉塔塞利高原的喀斯特洞穴。该洞穴于2018年首次被发现,探险者到达了-500米深处。在2019年的第二次探险中,在-1040米深处设立了一个营地,为期4天。为了评估人类对一个新探索的洞穴的影响,选择这个营地深度作为我们的研究区域,因为这是它的首次入口。在营地安装之前和结束时,从营地区域及其周围的不同点采集了沉积物和表面样本。使用下一代测序(NGS)方法对每个样本的16s rRNA进行测序以分离DNA。露营前微生物多样性的概况显示,嗜热栖热菌纲在古菌组中占主导地位,γ-变形菌纲和α-变形菌纲是最主要的细菌纲。露营后,大多数研究地点的微生物多样性都有所下降,尤其是之前提到的纲的菌株。芽孢杆菌纲的细菌在露营后有所增加。在最活跃的区域也观察到拟杆菌纲细菌的增加。本研究强调了洞穴微生物多样性如何在封闭洞穴内短时间内对人类活动做出反应。此外,它可能为改善洞穴管理技术和洞穴自然保护的探险规划提供坚实的基础和支持。