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利用全基因组关联研究鉴定干旱和热胁迫下与小麦籽粒铁和锌含量相关的基因组区域

Identification of genomic regions of wheat associated with grain Fe and Zn content under drought and heat stress using genome-wide association study.

作者信息

Devate Narayana Bhat, Krishna Hari, Sunilkumar V P, Manjunath Karthik Kumar, Mishra C N, Jain Neelu, Singh G P, Singh P K

机构信息

Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India.

ICAR- Indian Institute of Wheat and Barley Research, Karnal, India.

出版信息

Front Genet. 2022 Oct 21;13:1034947. doi: 10.3389/fgene.2022.1034947. eCollection 2022.

DOI:10.3389/fgene.2022.1034947
PMID:36338980
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9634069/
Abstract

Wheat is the staple food crop of global importance for its grain nutrient quality. Grain iron and zinc content of the wheat grain is an important quantitatively inherited trait that is influenced by the environmental factors such as drought and heat stress. Phenotypic evaluation of 295 advanced breeding lines from the wheat stress breeding program of IARI was carried out under timely sown irrigated (IR), restricted irrigated, and late-sown conditions at New Delhi during the cropping season of 2020-21, and grain iron (GFeC) and zinc (GZnC) contents were estimated from both control and treatments. A statistically significant increase in GFeC and GZnC was observed under stress conditions compared to that of the control. Genotyping was carried out with the SNPs from the 35K Axiom Breeder's array, and marker-trait association was identified by GWAS analysis. Of the 23 MTAs identified, seven were linked with GFeC and sixteen were linked with GZnC. analysis revealed a few important transcripts involved in various plant metabolism, growth, and development activities such as , , , , , and The identified MTAs can be used for molecular breeding after validation and also for rapid development of micronutrient-rich varieties of wheat to mitigate hidden hunger.

摘要

小麦因其籽粒营养品质而成为具有全球重要性的主食作物。小麦籽粒中的铁和锌含量是一个重要的数量遗传性状,受干旱和热胁迫等环境因素影响。在2020 - 2021年种植季节,于新德里对印度农业研究机构(IARI)小麦胁迫育种项目的295个高级育种系进行了表型评估,评估在适时播种灌溉(IR)、限制灌溉和晚播条件下进行,并对对照和处理的籽粒铁(GFeC)和锌(GZnC)含量进行了估算。与对照相比,在胁迫条件下观察到GFeC和GZnC有统计学上的显著增加。使用来自35K Axiom育种家芯片的单核苷酸多态性(SNP)进行基因分型,并通过全基因组关联研究(GWAS)分析鉴定标记 - 性状关联。在鉴定出的23个标记 - 性状关联(MTA)中,7个与GFeC相关,16个与GZnC相关。 分析揭示了一些参与各种植物代谢、生长和发育活动的重要转录本,如 、 、 、 、 和 。鉴定出的MTA经验证后可用于分子育种,也可用于快速培育富含微量营养素的小麦品种,以缓解隐性饥饿。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/0587eef46c19/fgene-13-1034947-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/034b9b4e011d/fgene-13-1034947-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/87d4065dfc2e/fgene-13-1034947-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/0587eef46c19/fgene-13-1034947-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/034b9b4e011d/fgene-13-1034947-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/87d4065dfc2e/fgene-13-1034947-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b78/9634069/0587eef46c19/fgene-13-1034947-g003.jpg

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