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新种,从黑猪粪便中分离得到()。

sp. nov., Isolated from Feces of Black Pig ().

作者信息

Lee Ai-Yun, Chen Chia-Hsuan, Liou Jong-Shian, Lin Yu-Chun, Hamada Moriyuki, Wang Yu-Ting, Peng Lin-Liang, Chang Shen-Chang, Chen Chih-Chieh, Lin Chuen-Fu, Huang Lina, Huang Chien-Hsun

机构信息

Bioresource Collection and Research Center (BCRC), Food Industry Research and Development Institute, Hsinchu 30062, Taiwan.

Livestock Research Institute, Council of Agriculture, Executive Yuan, Tainan 71246, Taiwan.

出版信息

Life (Basel). 2022 Oct 31;12(11):1749. doi: 10.3390/life12111749.

Abstract

An aerobic bacterium, designated as strain KD337-16T, was isolated from the fecal samples of a black pig. It exhibited spherical, non-motile and non−spore-forming, Gram-positive cells. KD337-16T was identified as a member of the genus Micrococcus through 16S rRNA gene sequencing, and its closest relatives were found to be Micrococcus endophyticus YIM 56238T (99.5% similarity), Micrococcus luteus NCTC 2665T (99.1%), Micrococcus yunnanensis YIM 65004T (99.1%), Micrococcus aloeverae AE-6T (99.1%), Micrococcus antarcticus T2T (98.9%), and Micrococcus flavus LW4T (98.7%). Phylogenomic trees were constructed, and strain KD337-16T was found to form its own cluster as an independent lineage of M. flavus LW4T. Between KD337-16T and its close relatives, the average nucleotide identity, average amino acid identity, and digital DNA−DNA hybridization were below the respective species delineation thresholds at 82.1−86.6%, 78.1−86.1%, and 24.4−34.9%. The major cellular fatty acids and polar lipids were anteiso-C15:0 and iso-C15:0, and DPG and PG, respectively. The predominant menaquinone was MK-8(H2). Taken together, the results indicate that strain KD337-16T is a novel species of the genus Micrococcus, for which the name Micrococcus porci sp. nov. is proposed. The type strain is KD337-16T (=BCRC 81318T = NBRC 115578T).

摘要

从一头黑猪的粪便样本中分离出一株需氧细菌,命名为KD337-16T菌株。它呈现出球形、无运动性、不形成芽孢的革兰氏阳性细胞。通过16S rRNA基因测序,KD337-16T被鉴定为微球菌属的成员,发现其最接近的亲缘种是内生微球菌YIM 56238T(相似度99.5%)、藤黄微球菌NCTC 2665T(99.1%)、云南微球菌YIM 65004T(99.1%)、芦荟微球菌AE-6T(99.1%)、南极微球菌T2T(98.9%)和黄微球菌LW4T(98.7%)。构建了系统发育树,发现KD337-16T菌株作为黄微球菌LW4T的一个独立谱系形成了自己的聚类。在KD337-16T与其近缘种之间,平均核苷酸同一性、平均氨基酸同一性和数字DNA-DNA杂交分别低于各自的种界定阈值,为82.1-86.6%、78.1-86.1%和24.4-34.9%。主要的细胞脂肪酸和极性脂质分别是anteiso-C15:0和iso-C15:0,以及DPG和PG。主要的甲基萘醌是MK-8(H2)。综合来看,结果表明KD337-16T菌株是微球菌属的一个新物种,为此提出名为猪微球菌(Micrococcus porci sp. nov.)。模式菌株是KD337-16T(=BCRC 81318T = NBRC 115578T)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cfe/9697426/96f84d3c7df6/life-12-01749-g001.jpg

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