Suppr超能文献

基于生物信息学的研究表明,AP2M1受circRNA-miRNA-mRNA相互作用网络调控并影响阿尔茨海默病。

Bioinformatics-based study reveals that AP2M1 is regulated by the circRNA-miRNA-mRNA interaction network and affects Alzheimer's disease.

作者信息

Zhang Qi, Chen Bishuang, Yang Ping, Wu Jipan, Pang Xinping, Pang Chaoyang

机构信息

School of Computer Science, Sichuan Normal University, Chengdu, China.

West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, China.

出版信息

Front Genet. 2022 Nov 18;13:1049786. doi: 10.3389/fgene.2022.1049786. eCollection 2022.

Abstract

Alzheimer's disease (AD) is a progressive neurological disease that worsens with time. The hallmark illnesses include extracellular senile plaques caused by β-amyloid protein deposition, neurofibrillary tangles caused by tau protein hyperphosphorylation, and neuronal loss accompanying glial cell hyperplasia. Noncoding RNAs are substantially implicated in related pathophysiology, according to mounting data. However, the function of these ncRNAs is mainly unclear. Circular RNAs (circRNAs) include many miRNA-binding sites (miRNA response elements, MREs), which operate as miRNA sponges or competing endogenous RNAs (ceRNAs). The purpose of this study was to look at the role of circular RNAs (circRNAs) and microRNAs (miRNAs) in Alzheimer's disease (AD) as possible biomarkers. The Gene Expression Omnibus (GEO) database was used to obtain an expression profile of Alzheimer's disease patients (GSE5281, GSE122603, GSE97760, GSE150693, GSE1297, and GSE161435). Through preliminary data deletion, 163 genes with significant differences, 156 miRNAs with significant differences, and 153 circRNAs with significant differences were identified. Then, 10 key genes, led by and , were identified by the mediation center algorithm, 34 miRNAs with obvious prognosis were identified by the cox regression model, and 16 key circRNAs were selected by the database. To develop competitive endogenous RNA (ceRNA) networks, hub circRNAs and mRNAs were used. Finally, GO analysis and clinical data verification of key genes were carried out. We discovered that a down-regulated circRNA (has_circ_002048) caused the increased expression of numerous miRNAs, which further inhibited the expression of a critical mRNA (), leading to Alzheimer's disease pathology. The findings of this work contribute to a better understanding of the circRNA-miRNA-mRNA regulating processes in Alzheimer's disease. Furthermore, the ncRNAs found here might become novel biomarkers and potential targets for the development of Alzheimer's drugs.

摘要

阿尔茨海默病(AD)是一种随着时间推移而恶化的进行性神经疾病。其标志性病变包括由β-淀粉样蛋白沉积引起的细胞外老年斑、由tau蛋白过度磷酸化引起的神经原纤维缠结以及伴随胶质细胞增生的神经元丢失。越来越多的数据表明,非编码RNA在相关病理生理学中起着重要作用。然而,这些非编码RNA的功能主要尚不清楚。环状RNA(circRNAs)包含许多微小RNA结合位点(微小RNA反应元件,MREs),其作为微小RNA海绵或竞争性内源性RNA(ceRNAs)发挥作用。本研究的目的是探讨环状RNA(circRNAs)和微小RNA(miRNAs)在阿尔茨海默病(AD)中作为潜在生物标志物的作用。利用基因表达综合数据库(GEO)获取阿尔茨海默病患者的表达谱(GSE5281、GSE122603、GSE97760、GSE150693、GSE1297和GSE161435)。通过初步数据删除,鉴定出163个有显著差异的基因、156个有显著差异的微小RNA和153个有显著差异的环状RNA。然后,通过中介中心算法鉴定出以 和 为首的10个关键基因,通过cox回归模型鉴定出34个具有明显预后的微小RNA,并通过数据库选择出16个关键环状RNA。为构建竞争性内源性RNA(ceRNA)网络, 使用了枢纽环状RNA和信使核糖核酸。最后,对关键基因进行了基因本体(GO)分析和临床数据验证。我们发现一个下调的环状RNA(has_circ_002048)导致众多微小RNA的表达增加,这进一步抑制了一个关键信使核糖核酸()的表达,从而导致阿尔茨海默病病理改变。这项工作的发现有助于更好地理解阿尔茨海默病中环状RNA-微小RNA-信使核糖核酸的调控过程。此外,在此发现的非编码RNA可能成为阿尔茨海默病药物开发的新型生物标志物和潜在靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e0b/9716081/be6e20b8f3fe/fgene-13-1049786-g001.jpg

相似文献

2
CircRNA-ceRNA Network Revealing the Potential Regulatory Roles of CircRNA in Alzheimer's Disease Involved the cGMP-PKG Signal Pathway.
Front Mol Neurosci. 2021 May 21;14:665788. doi: 10.3389/fnmol.2021.665788. eCollection 2021.
6
Identification of the circRNA-miRNA-mRNA regulatory network and its prognostic effect in colorectal cancer.
World J Clin Cases. 2021 Jun 26;9(18):4520-4541. doi: 10.12998/wjcc.v9.i18.4520.
7
Construction of a circRNA-miRNA-mRNA Regulatory Network for Coronary Artery Disease by Bioinformatics Analysis.
Cardiol Res Pract. 2022 Feb 16;2022:4017082. doi: 10.1155/2022/4017082. eCollection 2022.
8
Identification of epithelial-mesenchymal transition-related circRNA-miRNA-mRNA ceRNA regulatory network in breast cancer.
Pathol Res Pract. 2020 Sep;216(9):153088. doi: 10.1016/j.prp.2020.153088. Epub 2020 Jun 29.
9
Construction and Bioinformatics Analysis of circRNA-miRNA-mRNA Network in Acute Myocardial Infarction.
Front Genet. 2022 Mar 29;13:854993. doi: 10.3389/fgene.2022.854993. eCollection 2022.
10
Construction of a circRNA-Mediated ceRNA Network Reveals Novel Biomarkers for Aortic Dissection.
Int J Gen Med. 2022 Apr 12;15:3951-3964. doi: 10.2147/IJGM.S355906. eCollection 2022.

引用本文的文献

1
Identification of and NLRP3 inflammasome activation in Alzheimer's disease retina.
Res Sq. 2025 Jun 26:rs.3.rs-6658954. doi: 10.21203/rs.3.rs-6658954/v1.
2
Identification of and NLRP3 inflammasome activation in Alzheimer's disease retina.
bioRxiv. 2025 Jun 25:2025.06.19.660619. doi: 10.1101/2025.06.19.660619.
4
The Role of circRNAs in the Pathological Mechanisms of Alzheimer's Disease: Potential Biomarkers for Diagnosis.
Curr Neuropharmacol. 2025;23(6):635-649. doi: 10.2174/011570159X337659241014140824.
6
Investigation of the Circular Transcriptome in Alzheimer's Disease Brain.
J Mol Neurosci. 2024 Jul 9;74(3):64. doi: 10.1007/s12031-024-02236-0.
8
Exploring the Regulatory Landscape of Dementia: Insights from Non-Coding RNAs.
Int J Mol Sci. 2024 Jun 4;25(11):6190. doi: 10.3390/ijms25116190.
9
Sensitivity of substrate translocation in chaperone-mediated autophagy to Alzheimer's disease progression.
Aging (Albany NY). 2024 May 23;16(10):9072-9105. doi: 10.18632/aging.205856.
10
A review and analysis of key biomarkers in Alzheimer's disease.
Front Neurosci. 2024 Feb 20;18:1358998. doi: 10.3389/fnins.2024.1358998. eCollection 2024.

本文引用的文献

1
Synaptic Secretion and Beyond: Targeting Synapse and Neurotransmitters to Treat Neurodegenerative Diseases.
Oxid Med Cell Longev. 2022 Jul 25;2022:9176923. doi: 10.1155/2022/9176923. eCollection 2022.
3
miRNA-126a-3p participates in hippocampal memory via alzheimer's disease-related proteins.
Cereb Cortex. 2022 Oct 20;32(21):4763-4781. doi: 10.1093/cercor/bhab515.
4
5
Expression of Linear and Circular lncRNAs in Alzheimer's Disease.
J Mol Neurosci. 2022 Feb;72(2):187-200. doi: 10.1007/s12031-021-01900-z. Epub 2021 Aug 20.
6
Circular RNAs and complex diseases: from experimental results to computational models.
Brief Bioinform. 2021 Nov 5;22(6). doi: 10.1093/bib/bbab286.
10
CircRNA-ceRNA Network Revealing the Potential Regulatory Roles of CircRNA in Alzheimer's Disease Involved the cGMP-PKG Signal Pathway.
Front Mol Neurosci. 2021 May 21;14:665788. doi: 10.3389/fnmol.2021.665788. eCollection 2021.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验