Laboratory of Genetic Breeding in Tomato, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China.
Int J Mol Sci. 2022 Dec 9;23(24):15624. doi: 10.3390/ijms232415624.
Flower development is not only an important way for tomato reproduction but also an important guarantee for tomato fruit production. Although more and more attention has been paid to the study of flower development, there are few studies on the molecular mechanism and gene expression level of tomato flower development. In this study, RNA-seq analysis was performed on two stages of tomato flower development using the Illumina sequencing platform. A total of 8536 DEGs were obtained by sequencing, including 3873 upregulated DEGs and 4663 down-regulated DEGs. These differentially expressed genes are related to plant hormone signaling, starch and sucrose metabolism. The pathways such as pentose, glucuronate interconversion, and Phenylpropanoid biosynthesis are closely related and mainly involved in plant cellular and metabolic processes. According to the enrichment analysis results of DEGs, active energy metabolism can be inferred during flower development, indicating that flower development requires a large amount of energy and material supply. In addition, some plant hormones, such as GA, may also have effects on flower development. Combined with previous studies, the expression levels of and three of were significantly increased in the full flowering stage compared with the flower bud stage, indicating that these genes may be closely related to flower development. These genes were previously reported in Arabidopsis but not in tomatoes. Our next work will conduct a detailed functional analysis of the identified bZIP family genes to characterize their association with tomato flower size. This study will provide new genetic resources for flower formation and provide a basis for tomato yield breeding.
花发育不仅是番茄繁殖的重要方式,也是番茄果实生产的重要保障。尽管越来越多的人关注花发育的研究,但对番茄花发育的分子机制和基因表达水平的研究却很少。本研究采用 Illumina 测序平台对番茄花发育的两个阶段进行了 RNA-seq 分析。通过测序共获得 8536 个 DEGs,包括 3873 个上调 DEGs 和 4663 个下调 DEGs。这些差异表达基因与植物激素信号转导、淀粉和蔗糖代谢有关。与戊糖、葡萄糖醛酸相互转化和苯丙烷生物合成等途径密切相关,主要参与植物细胞和代谢过程。根据 DEGs 的富集分析结果,可以推断花发育过程中存在活跃的能量代谢,表明花发育需要大量的能量和物质供应。此外,一些植物激素,如 GA,也可能对花发育有影响。结合以往的研究,与花芽期相比,在完全开花期, 和 中的三个基因的表达水平显著增加,表明这些基因可能与花发育密切相关。这些基因在拟南芥中有报道,但在番茄中没有报道。我们的下一步工作将对鉴定出的 bZIP 家族基因进行详细的功能分析,以表征它们与番茄花大小的关联。本研究将为花形成提供新的遗传资源,并为番茄产量育种提供基础。