Laboratory of Genetic Breeding in Tomato, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China.
Int J Mol Sci. 2021 Jul 29;22(15):8128. doi: 10.3390/ijms22158128.
Flowering is a morphogenetic process in which angiosperms shift from vegetative growth to reproductive growth. Flowering time has a strong influence on fruit growth, which is closely related to productivity. Therefore, research on crop flowering time is particularly important. To better understand the flowering period of the tomato, we performed transcriptome sequencing of early flower buds and flowers during the extension period in the later-flowering "Moneymaker" material and the earlier-flowering "20965" homozygous inbred line, and we analyzed the obtained data. At least 43.92 million clean reads were obtained from 12 datasets, and the similarity with the tomato internal reference genome was 92.86-94.57%. Based on gene expression and background annotations, 49 candidate genes related to flowering time and flower development were initially screened, among which the greatest number belong to the photoperiod pathway. According to the expression pattern of candidate genes, the cause of early flowering of "20965" is predicted. The modes of action of the differentially expressed genes were classified, and the results show that they are closely related to hormone regulation and participated in a variety of life activities in crops. The candidate genes we screened and the analysis of their expression patterns provide a basis for future functional verification, helping to explore the molecular mechanism of tomato flowering time more comprehensively.
开花是一种形态发生过程,在此过程中,被子植物从营养生长转变为生殖生长。开花时间对果实生长有很强的影响,而果实生长与生产力密切相关。因此,研究作物的开花时间尤为重要。为了更好地了解番茄的开花期,我们对晚开花“Moneymaker”材料和早开花“20965”纯合自交系的伸蔓期早期花蕾和花朵进行了转录组测序,并对获得的数据进行了分析。从 12 个数据集获得了至少 4392 万条清洁读段,与番茄参考基因组的相似度为 92.86%-94.57%。基于基因表达和背景注释,初步筛选出与开花时间和花发育相关的 49 个候选基因,其中属于光周期途径的基因数量最多。根据候选基因的表达模式,预测了“20965”早开花的原因。对差异表达基因的作用模式进行了分类,结果表明它们与激素调节密切相关,参与了作物的各种生命活动。我们筛选的候选基因及其表达模式的分析为未来的功能验证提供了基础,有助于更全面地探索番茄开花时间的分子机制。