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基于 CT 的机器学习放射组学预测卵巢癌 CCR5 表达水平和生存。

CT-based machine learning radiomics predicts CCR5 expression level and survival in ovarian cancer.

机构信息

Department of Gynecology and Obstetrics, Shanghai Key Laboratory of Maternal Fetal Medicine, Shanghai Institute of Maternal-Fetal Medicine and Gynecologic Oncology, Shanghai First Maternity and Infant Hospital, School of Medicine, Tongji University, Shanghai, 200092, China.

Shanghai Key Laboratory of Maternal Fetal Medicine, Shanghai Institute of Maternal-Fetal Medicine and Gynecologic Oncology, Shanghai First Maternity and Infant Hospital, School of Medicine, Tongji University, Shanghai, 200092, China.

出版信息

J Ovarian Res. 2023 Jan 3;16(1):1. doi: 10.1186/s13048-022-01089-8.

Abstract

OBJECTIVE

We aimed to evaluate the prognostic value of C-C motif chemokine receptor type 5 (CCR5) expression level for patients with ovarian cancer and to establish a radiomics model that can predict CCR5 expression level using The Cancer Imaging Archive (TCIA) and The Cancer Genome Atlas (TCGA) database.

METHODS

A total of 343 cases of ovarian cancer from the TCGA were used for the gene-based prognostic analysis. Fifty seven cases had preoperative computed tomography (CT) images stored in TCIA with genomic data in TCGA were used for radiomics feature extraction and model construction. 89 cases with both TCGA and TCIA clinical data were used for radiomics model evaluation. After feature extraction, a radiomics signature was constructed using the least absolute shrinkage and selection operator (LASSO) regression analysis. A prognostic scoring system incorporating radiomics signature based on CCR5 expression level and clinicopathologic risk factors was proposed for survival prediction.

RESULTS

CCR5 was identified as a differentially expressed prognosis-related gene in tumor and normal sample, which were involved in the regulation of immune response and tumor invasion and metastasis. Four optimal radiomics features were selected to predict overall survival. The performance of the radiomics model for predicting the CCR5 expression level with 10-fold cross- validation achieved Area Under Curve (AUCs) of 0.770 and of 0.726, respectively, in the training and validation sets. A predictive nomogram was generated based on the total risk score of each patient, the AUCs of the time-dependent receiver operating characteristic (ROC) curve of the model was 0.8, 0.673 and 0.792 for 1-year, 3-year and 5-year, respectively. Along with clinical features, important imaging biomarkers could improve the overall survival accuracy of the prediction model.

CONCLUSION

The expression levels of CCR5 can affect the prognosis of patients with ovarian cancer. CT-based radiomics could serve as a new tool for prognosis prediction.

摘要

目的

我们旨在评估 C-C 基序趋化因子受体 5(CCR5)表达水平对卵巢癌患者的预后价值,并利用癌症成像档案(TCIA)和癌症基因组图谱(TCGA)数据库建立一个可预测 CCR5 表达水平的放射组学模型。

方法

使用 TCGA 中 343 例卵巢癌病例进行基于基因的预后分析。在 TCIA 中存储了 57 例卵巢癌患者的术前计算机断层扫描(CT)图像,这些患者的基因组数据在 TCGA 中,用于放射组学特征提取和模型构建。在 TCGA 和 TCIA 中均有临床数据的 89 例患者用于放射组学模型评估。在特征提取后,使用最小绝对值收缩和选择算子(LASSO)回归分析构建放射组学特征。根据 CCR5 表达水平和临床病理危险因素,建立了一个包含放射组学特征的预后评分系统,用于生存预测。

结果

CCR5 被确定为肿瘤和正常样本中差异表达的预后相关基因,其参与免疫反应和肿瘤侵袭转移的调节。选择了 4 个最佳的放射组学特征来预测总生存。在 10 倍交叉验证中,放射组学模型预测 CCR5 表达水平的性能在训练集和验证集中的 AUC 分别为 0.770 和 0.726。基于每位患者的总风险评分生成了一个预测诺模图,该模型的时间依赖性接受者操作特征(ROC)曲线的 AUC 在 1 年、3 年和 5 年时分别为 0.8、0.673 和 0.792。除了临床特征外,重要的影像学生物标志物可以提高预测模型的总体生存率准确性。

结论

CCR5 的表达水平可能会影响卵巢癌患者的预后。基于 CT 的放射组学可以作为一种新的预后预测工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c85/9811797/c48d4aaadc44/13048_2022_1089_Fig1_HTML.jpg

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