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多基因风险评分对波兰患者年龄相关性黄斑变性易感性的影响。

Polygenic Risk Score Impact on Susceptibility to Age-Related Macular Degeneration in Polish Patients.

作者信息

Wąsowska Anna, Teper Sławomir, Matczyńska Ewa, Łyszkiewicz Przemysław, Sendecki Adam, Machalińska Anna, Wylęgała Edward, Boguszewska-Chachulska Anna

机构信息

Chair and Clinical Department of Ophthalmology, Faculty of Medical Sciences in Zabrze, Medical University of Silesia, 40-752 Katowice, Poland.

Genomed S.A., 02-971 Warszawa, Poland.

出版信息

J Clin Med. 2022 Dec 30;12(1):295. doi: 10.3390/jcm12010295.

Abstract

Age-related macular degeneration (AMD) is a common retina degenerative disease with a complex genetic and environmental background. This study aimed to determine the polygenic risk score (PRS) stratification between the AMD case and control patients. The PRS model was established on the targeted sequencing data of a cohort of 471 patients diagnosed with AMD and 167 healthy controls without symptoms of retinal degeneration. The highest predictive value to the target dataset was achieved for a 22-variant model with a p-value lower than threshold PT = 0.0123. The median PRS for cases was higher by 1.1 than for control samples (95% CI: (−1.19; −0.85)). The patients in the highest quantile had a significantly higher relative risk of developing AMD than those in the lowest reference quantile (OR = 35.13, 95% CI: (7.9; 156.1), p < 0.001). The diagnostic ability was investigated using ROC analysis with AUC = 0.76 (95% CI: (0.72; 0.80)). The polygenic susceptibility to AMD may be the starting point to expand AMD diagnostics based on rare highly penetrant variants and investigate associations with disease progression and treatment response in Polish patients in future studies.

摘要

年龄相关性黄斑变性(AMD)是一种常见的视网膜退行性疾病,具有复杂的遗传和环境背景。本研究旨在确定AMD病例组和对照组患者之间的多基因风险评分(PRS)分层。PRS模型是基于471例诊断为AMD的患者和167例无视网膜退行性病变症状的健康对照者的靶向测序数据建立的。对于一个包含22个变异体的模型,其对目标数据集的预测价值最高,p值低于阈值PT = 0.0123。病例组的PRS中位数比对照组样本高1.1(95%置信区间:(-1.19;-0.85))。最高四分位数的患者发生AMD的相对风险显著高于最低参考四分位数的患者(OR = 35.13,95%置信区间:(7.9;156.1),p < 0.001)。使用ROC分析评估诊断能力,AUC = 0.76(95%置信区间:(0.72;0.80))。AMD的多基因易感性可能是未来研究中基于罕见的高 penetrance 变异体扩展AMD诊断,并研究与波兰患者疾病进展和治疗反应之间关联的起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f141/9821027/0b0c81a55a89/jcm-12-00295-g001.jpg

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