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基于靶向测序的多基因风险评分和罕见变异负担分析在一组年龄相关性黄斑变性伴色素上皮脱离患者中的应用。

Polygenic Risk Score and Rare Variant Burden Identified by Targeted Sequencing in a Group of Patients with Pigment Epithelial Detachment in Age-Related Macular Degeneration.

机构信息

Chair and Clinical Department of Ophthalmology, Faculty of Medical Sciences in Zabrze, Medical University of Silesia, 40-055 Katowice, Poland.

Genomed S.A., 02-972 Warszawa, Poland.

出版信息

Genes (Basel). 2023 Aug 27;14(9):1707. doi: 10.3390/genes14091707.

Abstract

A subset of ophthalmic imaging examination results from 334 patients were subjected to reanalysis to identify a specific group of patients with pigment epithelial detachment (PED) in at least one eye. Overall, we found a subgroup of 47 patients manifesting PED and studied their genotypes in comparison to those of patients with age-related macular degeneration without PED and healthy controls. We established a polygenic risk score that allowed the explanation of 16.3% of the variation within the disease. The highest predictive value was achieved for a model consisting of six non-coding variants: rs760306 (), rs148662546 (), rs11569560 (), rs74600252 (), rs2240688 (), and rs185507582 (). The risk of PED occurrence was found to be the highest in the first tercile, showing a 7.89-fold higher risk compared to the third tercile for AMD without PED (95% CI: 2.87; 21.71, < 0.001) and a 7.22-fold higher risk compared to the healthy controls (95% CI: 2.60; 20.06, < 0.001). In addition, we focused on rare variants in targeted genes. The rare variants' burden was compared among the groups, but no statistical significance was observed in the number of rare variants, predicted functional effects, or pathogenicity classification.

摘要

对 334 名患者的一部分眼科影像学检查结果进行了重新分析,以确定至少一只眼存在色素上皮脱离 (PED) 的特定患者群体。总的来说,我们发现了一个有 47 名患者表现出 PED 的亚组,并对他们的基因型进行了研究,将其与没有 PED 的年龄相关性黄斑变性患者和健康对照组进行了比较。我们建立了一个多基因风险评分,可以解释该疾病内 16.3%的变异。由六个非编码变异体组成的模型达到了最高的预测值:rs760306()、rs148662546()、rs11569560()、rs74600252()、rs2240688()和 rs185507582()。PED 发生的风险在第一三分位数最高,与没有 PED 的 AMD 第三三分位数相比,风险高 7.89 倍(95%CI:2.87;21.71, < 0.001),与健康对照组相比,风险高 7.22 倍(95%CI:2.60;20.06, < 0.001)。此外,我们还关注了靶向基因中的稀有变异。比较了各组之间稀有变异的负担,但在稀有变异的数量、预测的功能效应或致病性分类方面没有观察到统计学意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/541a/10531282/9012d4e32ff4/genes-14-01707-g001.jpg

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