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光反应性生物正交脂质探针及其在哺乳动物生物学中的应用。

Photoreactive bioorthogonal lipid probes and their applications in mammalian biology.

作者信息

Shanbhag Karthik, Sharma Kavita, Kamat Siddhesh S

机构信息

Department of Biology, Indian Institute of Science Education and Research (IISER), Dr Homi Bhabha Road, Pashan Pune 411008 Maharashtra India

出版信息

RSC Chem Biol. 2022 Dec 12;4(1):37-46. doi: 10.1039/d2cb00174h. eCollection 2023 Jan 4.

Abstract

Lipids are an important class of biological molecules that possess many critical physiological functions, which enable the optimal survival of all organisms, including humans. While the role of lipids in the formation of biological cellular membranes and as a source of energy is fairly well understood, the cellular signalling pathways that lipids modulate in mammals are, in comparison, poorly characterized mechanistically and/or largely unknown. In an effort to dissect these mammalian cellular pathways regulated by signalling lipids and map hitherto unknown protein-lipid interactions, the last two decades have seen tremendous progress in the development of multifunctional lipid probes that, in conjunction with well-established bioorthogonal chemistries and chemoproteomics platforms, has almost exponentially expanded our knowledge in this field. In this review, we focus on the various photoreactive bioorthogonal lipid probes described in the literature, and briefly summarize the different photo-crosslinking groups and bioorthogonal chemistries used by them. Furthermore, we report specific case examples of such photoreactive bioorthogonal lipid probes, and discuss the new biological pathways and insights that have emerged from their use through chemoproteomics in mammalian cells. Finally, we highlight the challenges associated with the use of lipid probes in biological systems, and highlight their importance in the discovery and mechanistic understanding of lipid signalling pathways in the years to come.

摘要

脂质是一类重要的生物分子,具有许多关键的生理功能,这些功能使包括人类在内的所有生物能够实现最佳生存。虽然脂质在生物细胞膜形成及作为能量来源方面的作用已得到较好理解,但相比之下,脂质在哺乳动物中调节的细胞信号通路在机制上的特征尚不明确,且在很大程度上仍不为人知。为了剖析这些由信号脂质调节的哺乳动物细胞通路,并绘制迄今未知的蛋白质 - 脂质相互作用图谱,在过去二十年中,多功能脂质探针的开发取得了巨大进展,这些探针与成熟的生物正交化学和化学蛋白质组学平台相结合,几乎呈指数级地扩展了我们在该领域的知识。在本综述中,我们聚焦于文献中描述的各种光反应性生物正交脂质探针,并简要总结它们所使用的不同光交联基团和生物正交化学。此外,我们报告此类光反应性生物正交脂质探针的具体实例,并讨论通过化学蛋白质组学在哺乳动物细胞中使用它们所产生的新生物途径和见解。最后,我们强调在生物系统中使用脂质探针所面临的挑战,并突出它们在未来几年脂质信号通路发现和机制理解中的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27b/9811504/baf2d60ccdb7/d2cb00174h-f1.jpg

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