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一种催化竞争的 2+2 和 4+2 环加成反应的环化酶。

A cyclase that catalyses competing 2 + 2 and 4 + 2 cycloadditions.

机构信息

State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Shanghai, China.

Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA.

出版信息

Nat Chem. 2023 Feb;15(2):177-184. doi: 10.1038/s41557-022-01104-x. Epub 2023 Jan 23.

Abstract

Cycloaddition reactions are among the most widely used reactions in chemical synthesis. Nature achieves these cyclization reactions with a variety of enzymes, including Diels-Alderases that catalyse concerted 4 + 2 cycloadditions, but biosynthetic enzymes with 2 + 2 cyclase activity have yet to be discovered. Here we report that PloI4, a β-barrel-fold protein homologous to the exo-selective 4 + 2 cyclase that functions in the biosynthesis of pyrroindomycins, catalyses competitive 2 + 2 and 4 + 2 cycloaddition reactions. PloI4 is believed to catalyse an endo-4 + 2 cycloaddition in the biosynthesis of pyrrolosporin A; however, when the substrate precursor of pyrroindomycins was treated with PloI4, an exo-2 + 2 adduct was produced in addition to the exo- and endo-4 + 2 adducts. Biochemical characterizations, computational analyses, (co)crystal structures and mutagenesis outcomes have allowed the catalytic versatility of PloI4 to be rationalized. Mechanistic studies involved the directed engineering of PloI4 to variants that produced the exo-4 + 2, endo-4 + 2 or exo-2 + 2 product preferentially. This work illustrates an enzymatic thermal 2 + 2 cycloaddition and provides evidence of a process through which an enzyme evolves along with its substrate for specialization and activity improvement.

摘要

环加成反应是化学合成中最广泛使用的反应之一。自然界利用各种酶来实现这些环化反应,包括催化协同 4+2 环加成的 Diels-Alderases,但具有 2+2 环化酶活性的生物合成酶尚未被发现。在这里,我们报告说,PloI4 是一种与 exo-选择性 4+2 环化酶同源的β-桶状蛋白,该酶在吡咯并霉素的生物合成中起作用,能够催化竞争性的 2+2 和 4+2 环加成反应。PloI4 被认为在吡咯孢菌素 A 的生物合成中催化endo-4+2 环加成;然而,当用 PloI4 处理吡咯并霉素的底物前体时,除了 exo-和 endo-4+2 加合物外,还产生了 exo-2+2 加合物。生化特性、计算分析、(共)晶体结构和突变体结果使 PloI4 的催化多功能性得到了合理化。涉及定向工程化 PloI4 以产生优先产生 exo-4+2、endo-4+2 或 exo-2+2 产物的变体的机制研究。这项工作说明了酶促热 2+2 环加成,并提供了证据表明,一种酶与其底物一起进化,以实现专业化和提高活性。

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