文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

通过 T 细胞受体和 T 细胞受体模拟抗体计算分析肽:MHC 识别。

Computationally profiling peptide:MHC recognition by T-cell receptors and T-cell receptor-mimetic antibodies.

机构信息

Oxford Protein Informatics Group, Department of Statistics, University of Oxford, Oxford, United Kingdom.

Biotherapeutics Discovery, Boehringer Ingelheim, Ridgefield, CT, United States.

出版信息

Front Immunol. 2023 Jan 9;13:1080596. doi: 10.3389/fimmu.2022.1080596. eCollection 2022.


DOI:10.3389/fimmu.2022.1080596
PMID:36700202
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9868621/
Abstract

T-cell receptor-mimetic antibodies (TCRms) targeting disease-associated peptides presented by Major Histocompatibility Complexes (pMHCs) are set to become a major new drug modality. However, we lack a general understanding of how TCRms engage pMHC targets, which is crucial for predicting their specificity and safety. Several new structures of TCRm:pMHC complexes have become available in the past year, providing sufficient initial data for a holistic analysis of TCRms as a class of pMHC binding agents. Here, we profile the complete set of TCRm:pMHC complexes against representative TCR:pMHC complexes to quantify the TCR-likeness of their pMHC engagement. We find that intrinsic molecular differences between antibodies and TCRs lead to fundamentally different roles for their heavy/light chains and Complementarity-Determining Region loops during antigen recognition. The idiotypic properties of antibodies may increase the likelihood of TCRms engaging pMHCs with less peptide selectivity than TCRs. However, the pMHC recognition features of some TCRms, including the two TCRms currently in clinical trials, can be remarkably TCR-like. The insights gained from this study will aid in the rational design and optimisation of next-generation TCRms.

摘要

靶向主要组织相容性复合物(MHC)呈递的疾病相关肽的 T 细胞受体模拟抗体(TCRm)有望成为一种新的主要药物模式。然而,我们缺乏对 TCRm 如何与 pMHC 靶标结合的全面了解,这对于预测其特异性和安全性至关重要。过去一年中,已经获得了几个新的 TCRm:pMHC 复合物结构,为作为一类 pMHC 结合剂的 TCRm 进行整体分析提供了足够的初始数据。在这里,我们对代表 TCR:pMHC 复合物的完整 TCRm:pMHC 复合物进行分析,以量化它们与 pMHC 结合的 TCR 样性。我们发现,抗体和 TCR 之间固有的分子差异导致它们的重链/轻链和互补决定区环在抗原识别过程中发挥根本不同的作用。抗体的独特型特性可能会增加 TCRm 与 TCR 相比结合 pMHC 的可能性,而肽选择性较低。然而,一些 TCRm 的 pMHC 识别特征,包括目前正在临床试验中的两种 TCRm,可以非常类似于 TCR。本研究获得的见解将有助于下一代 TCRm 的合理设计和优化。

相似文献

[1]
Computationally profiling peptide:MHC recognition by T-cell receptors and T-cell receptor-mimetic antibodies.

Front Immunol. 2022

[2]
T-cell receptor (TCR)-peptide specificity overrides affinity-enhancing TCR-major histocompatibility complex interactions.

J Biol Chem. 2014-1-10

[3]
MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions.

Appl Bioinformatics. 2006

[4]
Structural analysis of cancer-relevant TCR-CD3 and peptide-MHC complexes by cryoEM.

Nat Commun. 2023-4-26

[5]
A structural-based machine learning method to classify binding affinities between TCR and peptide-MHC complexes.

Mol Immunol. 2021-11

[6]
Structural patterns in class 1 major histocompatibility complex-restricted nonamer peptide binding to T-cell receptors.

Proteins. 2022-9

[7]
TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility.

J Immunol. 2014-2-12

[8]
The specificity of TCR/pMHC interaction.

Curr Opin Immunol. 2002-2

[9]
Antibody specific for the peptide.major histocompatibility complex. Is it T cell receptor-like?

J Biol Chem. 2004-10-22

[10]
Decoupling peptide binding from T cell receptor recognition with engineered chimeric MHC-I molecules.

Front Immunol. 2023

引用本文的文献

[1]
T-cell receptor structures and predictive models reveal comparable alpha and beta chain structural diversity despite differing genetic complexity.

Commun Biol. 2025-3-4

[2]
Quantifying conformational changes in the TCR:pMHC-I binding interface.

Front Immunol. 2024-12-2

[3]
A comparison of clustering models for inference of T cell receptor antigen specificity.

Immunoinformatics (Amst). 2024-3

[4]
Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction.

J Immunol. 2024-4-15

[5]
Experimental structures of antibody/MHC-I complexes reveal details of epitopes overlooked by computational prediction.

bioRxiv. 2023-12-4

[6]
Advances in vaccine development for cancer prevention and treatment in Lynch Syndrome.

Mol Aspects Med. 2023-10

本文引用的文献

[1]
TCR-like antibodies targeting autoantigen-mhc complexes: a mini-review.

Front Immunol. 2022

[2]
Validation and promise of a TCR mimic antibody for cancer immunotherapy of hepatocellular carcinoma.

Sci Rep. 2022-7-15

[3]
Mouse and human antibodies bind HLA-E-leader peptide complexes and enhance NK cell cytotoxicity.

Commun Biol. 2022-3-28

[4]
SAbDab in the age of biotherapeutics: updates including SAbDab-nano, the nanobody structure tracker.

Nucleic Acids Res. 2022-1-7

[5]
Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences.

Protein Sci. 2022-1

[6]
Overall Survival Benefit with Tebentafusp in Metastatic Uveal Melanoma.

N Engl J Med. 2021-9-23

[7]
Structural engineering of chimeric antigen receptors targeting HLA-restricted neoantigens.

Nat Commun. 2021-9-6

[8]
A high-affinity human TCR-like antibody detects celiac disease gluten peptide-MHC complexes and inhibits T cell activation.

Sci Immunol. 2021-8-20

[9]
Targeting intracellular WT1 in AML with a novel RMF-peptide-MHC-specific T-cell bispecific antibody.

Blood. 2021-12-23

[10]
Canonical T cell receptor docking on peptide-MHC is essential for T cell signaling.

Science. 2021-6-4

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索