Bhattacharjee Bipasha, Hallan Vipin
Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India.
Plant Virology Laboratory, Division of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur, India.
Front Microbiol. 2023 Jan 17;13:1067427. doi: 10.3389/fmicb.2022.1067427. eCollection 2022.
Nuclear factor-Y (NF-Y) transcription factors (TFs) are conserved heterotrimeric complexes present and widespread across eukaryotes. Three main subunits make up the structural and functional aspect of the NF-Y TFs: NF-YA, NF-YB and NF-YC, which bind to the conserved CCAAT- box of the promoter region of specific genes, while also interacting with each other, thereby forming myriad combinations. The NF-YBs are expressed differentially in various tissues and plant development stages, likely impacting many of the cellular processes constitutively and under stress conditions. In this study, ten members of NF-YB family from were identified and expression profiles were mined from microarray data under different biotic and abiotic conditions, revealing key insights into the involvement of this class of proteins in the cellular and biological processes in . Analysis of -acting regulatory elements (CAREs) indicated the presence of abiotic and biotic stress-related transcription factor binding sites (TFBs), shedding light on the multifaceted roles of these TFs. Microarray data analysis inferred distinct patterns of expression in various tissues under differing treatments such as drought, cold and heat stress as well as bacterial, fungal, and viral stress, indicating their likelihood of having an expansive range of regulatory functions under native and stressed conditions; while quantitative real-time PCR (qRT-PCR) based expression analysis revealed that these TFs get real-time-modulated in a stress dependent manner. This study, overall, provides an understanding of the AtNF-YB family of TFs in their regulation and participation in various morphogenetic and defense- related pathways and can provide insights for development of transgenic plants for trait dependent studies.
核因子-Y(NF-Y)转录因子是存在于真核生物中且广泛分布的保守异源三聚体复合物。NF-Y转录因子的结构和功能由三个主要亚基组成:NF-YA、NF-YB和NF-YC,它们与特定基因启动子区域保守的CCAAT框结合,同时相互作用,从而形成无数种组合。NF-YB在各种组织和植物发育阶段差异表达,可能在组成型和应激条件下影响许多细胞过程。在本研究中,从[具体来源未明确]中鉴定出10个NF-YB家族成员,并从不同生物和非生物条件下的微阵列数据中挖掘表达谱,揭示了这类蛋白质在[具体物种未明确]的细胞和生物学过程中的参与情况。对顺式作用调控元件(CAREs)的分析表明存在与非生物和生物胁迫相关的转录因子结合位点(TFBs),揭示了这些转录因子的多方面作用。微阵列数据分析推断在干旱、寒冷和热胁迫以及细菌、真菌和病毒胁迫等不同处理下,各种组织中存在不同的表达模式,表明它们在天然和胁迫条件下可能具有广泛的调控功能;而基于定量实时PCR(qRT-PCR)的表达分析表明这些转录因子以应激依赖的方式进行实时调节。总体而言,本研究提供了对AtNF-YB转录因子家族在其调控以及参与各种形态发生和防御相关途径方面的理解,并可为依赖性状研究的转基因植物开发提供见解。