• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

DNA 折纸基准用于精确的三维原子力显微镜成像。

DNA Origami Fiducial for Accurate 3D Atomic Force Microscopy Imaging.

机构信息

Department of Physics and Center for NanoScience, LMU Munich, Amalienstrasse 54, 80799Munich, Germany.

Department of Physics and Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CCUtrecht, The Netherlands.

出版信息

Nano Lett. 2023 Feb 22;23(4):1236-1243. doi: 10.1021/acs.nanolett.2c04299. Epub 2023 Feb 6.

DOI:10.1021/acs.nanolett.2c04299
PMID:36745573
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9951250/
Abstract

Atomic force microscopy (AFM) is a powerful technique for imaging molecules, macromolecular complexes, and nanoparticles with nanometer resolution. However, AFM images are distorted by the shape of the tip used. These distortions can be corrected if the tip shape can be determined by scanning a sample with features sharper than the tip and higher than the object of interest. Here we present a 3D DNA origami structure as fiducial for tip reconstruction and image correction. Our fiducial is stable under a broad range of conditions and has sharp steps at different heights that enable reliable tip reconstruction from as few as ten fiducials. The DNA origami is readily codeposited with biological and nonbiological samples, achieves higher precision for the tip apex than polycrystalline samples, and dramatically improves the accuracy of the lateral dimensions determined from the images. Our fiducial thus enables accurate and precise AFM imaging for a broad range of applications.

摘要

原子力显微镜(AFM)是一种强大的技术,可用于以纳米分辨率成像分子、大分子复合物和纳米粒子。然而,AFM 图像会因使用的探针形状而失真。如果可以通过扫描具有比探针更尖锐且高于感兴趣物体的特征的样品来确定探针形状,则可以对这些失真进行校正。在这里,我们提出了一种 3D DNA 折纸结构作为用于探针重建和图像校正的基准。我们的基准在广泛的条件下是稳定的,并且在不同高度具有锐利的台阶,使得仅从十个基准中就可以可靠地重建探针。该 DNA 折纸结构很容易与生物和非生物样品共沉积,比多晶样品具有更高的探针尖端精度,并极大地提高了从图像确定的横向尺寸的准确性。因此,我们的基准能够实现广泛应用的准确和精确的 AFM 成像。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/6a0484014041/nl2c04299_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/6e5543fcd087/nl2c04299_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/3e3c81095e8b/nl2c04299_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/4bede9f292ce/nl2c04299_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/517a609ee2cc/nl2c04299_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/6a0484014041/nl2c04299_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/6e5543fcd087/nl2c04299_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/3e3c81095e8b/nl2c04299_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/4bede9f292ce/nl2c04299_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/517a609ee2cc/nl2c04299_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bab/9951250/6a0484014041/nl2c04299_0005.jpg

相似文献

1
DNA Origami Fiducial for Accurate 3D Atomic Force Microscopy Imaging.DNA 折纸基准用于精确的三维原子力显微镜成像。
Nano Lett. 2023 Feb 22;23(4):1236-1243. doi: 10.1021/acs.nanolett.2c04299. Epub 2023 Feb 6.
2
Direct Observation of Dynamic Movement of DNA Molecules in DNA Origami Imaged Using High-Speed AFM.使用高速原子力显微镜成像直接观察DNA折纸中DNA分子的动态运动。
Methods Mol Biol. 2018;1814:213-224. doi: 10.1007/978-1-4939-8591-3_13.
3
Single-molecule imaging of dynamic motions of biomolecules in DNA origami nanostructures using high-speed atomic force microscopy.使用高速原子力显微镜对 DNA 折纸纳米结构中生物分子的动态运动进行单分子成像。
Acc Chem Res. 2014 Jun 17;47(6):1645-53. doi: 10.1021/ar400299m. Epub 2014 Mar 6.
4
High-speed near-field fluorescence microscopy combined with high-speed atomic force microscopy for biological studies.高速近场荧光显微镜与高速原子力显微镜相结合用于生物研究。
Biochim Biophys Acta Gen Subj. 2020 Feb;1864(2):129325. doi: 10.1016/j.bbagen.2019.03.011. Epub 2019 Mar 16.
5
Quantitative Assessment of Tip Effects in Single-Molecule High-Speed Atomic Force Microscopy Using DNA Origami Substrates.使用 DNA 折纸底物对单分子高速原子力显微镜中的尖端效应进行定量评估。
Angew Chem Int Ed Engl. 2020 Aug 17;59(34):14336-14341. doi: 10.1002/anie.202005884. Epub 2020 Jul 7.
6
Single-Molecule Visualization of B-Z Transition in DNA Origami Using High-Speed AFM.利用高速原子力显微镜对 DNA 折纸中的 B-Z 转变进行单分子可视化。
Methods Mol Biol. 2023;2651:241-250. doi: 10.1007/978-1-0716-3084-6_17.
7
High-resolution noncontact atomic force microscopy.高分辨率非接触式原子力显微镜
Nanotechnology. 2009 Jul 1;20(26):260201. doi: 10.1088/0957-4484/20/26/260201. Epub 2009 Jun 10.
8
Atomic force microscopy as an imaging tool to study the bio/nonbio complexes.原子力显微镜作为一种成像工具,用于研究生物/非生物复合物。
J Microsc. 2020 Dec;280(3):241-251. doi: 10.1111/jmi.12936. Epub 2020 Jun 17.
9
Atomic Force Microscopy (AFM) Analysis of an Object Larger and Sharper than the AFM Tip.对大于且锐于原子力显微镜(AFM)探针的物体进行原子力显微镜(AFM)分析。
Microsc Microanal. 2019 Oct;25(5):1106-1111. doi: 10.1017/S1431927619014697.
10
End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images.用于噪声原子力显微镜图像的端到端可微分盲端重建。
Sci Rep. 2023 Jan 4;13(1):129. doi: 10.1038/s41598-022-27057-2.

引用本文的文献

1
Analyzing DNA Origami Nanostructure Assembly by Dynamic Light Scattering and Nanoparticle Tracking Analysis.通过动态光散射和纳米颗粒跟踪分析来分析DNA折纸纳米结构组装
Small Methods. 2025 Aug;9(8):e2500295. doi: 10.1002/smtd.202500295. Epub 2025 Jun 19.
2
Correlation of precisely fabricated geometric characteristics of DNA-origami nanostructures with their cellular entry in human lens epithelial cells.精确构建的DNA折纸纳米结构的几何特征与其进入人晶状体上皮细胞的细胞内吞作用之间的相关性。
Discov Nano. 2025 Jan 22;20(1):13. doi: 10.1186/s11671-025-04188-9.
3
Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments.
超螺旋依赖的 DNA 结合:定量建模及其在体和单分子实验中的应用。
Nucleic Acids Res. 2024 Jan 11;52(1):59-72. doi: 10.1093/nar/gkad1055.
4
Site-directed placement of three-dimensional DNA origami.三维 DNA 折纸的定点定位放置。
Nat Nanotechnol. 2023 Dec;18(12):1456-1462. doi: 10.1038/s41565-023-01487-z. Epub 2023 Aug 28.
5
Lyophilization Reduces Aggregation of Three-Dimensional DNA Origami at High Concentrations.冻干可减少高浓度下三维DNA折纸结构的聚集。
ACS Omega. 2023 May 11;8(20):18225-18233. doi: 10.1021/acsomega.3c01680. eCollection 2023 May 23.