Lu Can-Hua, Chen Wei, Yin Hong-Hui, Lin Zhong-Long, Li Jun-Ying, Ma Jun-Hong, Gai Xiao-Tong, Jiang Ning, Cao Zheng-Hua, Qian Lei, Zhang Li-Qun, Jin Yan, Xia Zhen-Yuan
Yunnan Academy of Tobacco Agricultural Sciences, Kunming 650021, PR China.
Colledge of Plant Protection, China Agricultural University, Beijing 100193, PR China.
Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005622.
A Gram-negative, aerobic, motile with paired polar flagella and rod-shaped bacterium strain (56D2) was isolated from tobacco planting soil in Yunnan, PR China. Major fatty acids were C 7 (summed feature 3), C and C 7 (summed feature 8). The polar lipid profile of strain 56D2 consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, one unidentified aminophospholipid and one unidentified glycolipid. Moreover, strain 56D2 contained ubiquinone Q-8 as the sole respiratory quinone. 16S rRNA gene sequence analysis showed that strain 56D2 was closely related to members of the genus and the two type strains with the highest sequence identities were LMG 6866 (98.36 %) and K-288 (98.22 %). The 16S rRNA gene sequence identities between strain 56D2 and other members of the genus were below 98.00 %. Genome sequencing revealed a genome size of 5.87 Mb and a G+C content of 63.7 mol%. The average nucleotide identity values between strain 56D2 and K-288, LMG 6866 and CCUG 46789 were less than 95 %, and the DNA-DNA hybridization values (yielded by formula 2) were less than 70 %. Based on these data, we conclude that strain 56D2 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain of sp. nov. is 56D2 (=CCTCC AB 2021466=GDMCC 1.2886=JCM 35178).
从中国云南省烟草种植土壤中分离出一株革兰氏阴性、需氧、具双极生鞭毛且运动的杆状细菌菌株(56D2)。主要脂肪酸为C₁₇:₀(总和特征3)、C₁₉:₀ω8c和C₁₉:₀ω6c(总和特征8)。菌株56D2的极性脂质谱由双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、一种未鉴定的氨基磷脂和一种未鉴定的糖脂组成。此外,菌株56D2含有泛醌Q-8作为唯一的呼吸醌。16S rRNA基因序列分析表明,菌株56D2与某属的成员密切相关,序列同一性最高的两个模式菌株分别是某菌LMG 6866(98.36%)和某菌K-288(98.22%)。菌株56D2与该属其他成员之间的16S rRNA基因序列同一性低于98.00%。基因组测序显示基因组大小为5.87 Mb,G+C含量为63.7 mol%。菌株56D2与某菌K-288、某菌LMG 6866和某菌CCUG 46789之间的平均核苷酸同一性值小于95%,DNA-DNA杂交值(由公式2得出)小于70%。基于这些数据,我们得出结论,菌株56D2代表该属的一个新物种,为此提出新物种名为某菌新种。某菌新种的模式菌株为56D2(=CCTCC AB 2021466=GDMCC 1.2886=JCM 35178)。