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新种,有两个亚种,即新亚种和新亚种,从黄眼企鹅中分离得到。

sp. nov. with two subspecies, subsp. subsp. nov. and subsp. subsp. nov. isolated from yellow-eyed penguins.

作者信息

Nouioui Imen, Saunderson Sarah C, Midwinter Anne C, Young Melanie J, McInnes Kate M, Watts Jim, Sangal Vartul

机构信息

Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstraße 7B, 38124 Braunschweig, Germany.

Department of Microbiology and Immunology, School of Biomedical Sciences, University of Otago, PO Box 56, Dunedin 9054, New Zealand.

出版信息

Int J Syst Evol Microbiol. 2023 Feb;73(2). doi: 10.1099/ijsem.0.005713.

Abstract

Novel strains, 3B and 7B, were isolated from the oral cavities of young chicks of yellow-eyed penguins (hoiho), . A polyphasic taxonomic characterization of these strains revealed chemotaxonomic, biochemical and morphological features that are consistent with those of the genus . The 16S rRNA gene sequence similarity values between the strains and their closest phylogenetic neighbour, CCUG 47525 were 99.07 %, values that are in line with their phylogenomic positions within the evolutionary radiation of the genus . Digital DNA-DNA hybridization values and average nucleotide identities between the genome sequences of the two strains and related species were well below the defined threshold values (70 and 95-96 %, respectively) for prokaryotic species delineation. The genome size of these strains varied between 2.45-2.46 Mb with G+C content 62.7-62.9 mol%. Strains 3B and 7B were Gram-stain positive bacilli that were able to grow in presence of 0-10 % (w/v) NaCl and at temperature ranging between 20-37 °C. The major fatty acids (>15 %) were C and C 9, and the mycolic acid profile included 32-36 carbon atoms. We propose that these strains represent a novel species, sp. nov. with 3B (=DSM 111184=NZRM 4755) as the type strain. Phylogenomically, strains 3B and 7B belong to two lineages with subtle differences in MALDI-TOF spectra, chemotaxonomic profiles and phenotypic properties. The fatty acid profile of strain 3B contains C as a predominant type (>15 %), which is a minor component in strain 7B. Strain 7B can oxidize -acetyl-d-glucosamine, l-serine, α-hydroxy-butyric acid, l-malic acid, l-glutamic acid, bromo-succinic acid and l-lactic acid, characteristics not observed in strain 3B. Therefore, we propose that these strains represent two subspecies, namely subsp. subsp. nov. (type strain, 3B=DSM 111184=NZRM 4755) and subsp. subsp. nov. (type strain, 7B=DSM 111183=NZRM 4756).

摘要

从黄眼企鹅(黄眼企鹅)幼雏口腔中分离出了新菌株3B和7B。对这些菌株进行的多相分类学特征分析揭示了其化学分类学、生化和形态特征,这些特征与该属的特征一致。这些菌株与其最接近的系统发育邻居CCUG 47525之间的16S rRNA基因序列相似性值为99.07%,这与它们在该属进化辐射范围内的系统发育位置相符。两种菌株与相关物种的基因组序列之间的数字DNA-DNA杂交值和平均核苷酸同一性远低于原核生物物种划分的定义阈值(分别为70%和95 - 96%)。这些菌株的基因组大小在2.45 - 2.46 Mb之间,G + C含量为62.7 - 62.9 mol%。菌株3B和7B为革兰氏阳性杆菌,能够在0 - 10%(w/v)NaCl存在下以及20 - 37°C的温度范围内生长。主要脂肪酸(>15%)为C和C 9,分枝菌酸谱包含32 - 36个碳原子。我们提议这些菌株代表一个新物种,即新种,以3B(=DSM 111184=NZRM 4755)作为模式菌株。在系统发育基因组学上,菌株3B和7B属于两个谱系,在基质辅助激光解吸电离飞行时间质谱(MALDI-TOF)光谱、化学分类学图谱和表型特性方面存在细微差异。菌株3B的脂肪酸谱以C为主导类型(>15%),而在菌株7B中是次要成分。菌株7B能够氧化α-乙酰-D-葡萄糖胺、L-丝氨酸、α-羟基丁酸、L-苹果酸、L-谷氨酸、溴代琥珀酸和L-乳酸,菌株3B未观察到这些特征。因此,我们提议这些菌株代表两个亚种,即新亚种(模式菌株,3B=DSM 111184=NZRM 4755)和新亚种(模式菌株,7B=DSM 111183=NZRM 4756)。

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