Lisachov Artem, Rumyantsev Alexander, Prokopov Dmitry, Ferguson-Smith Malcolm, Trifonov Vladimir
Animal Genomics and Bioresource Research Unit (AGB Research Unit), Faculty of Science, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.
Institute of Cytology and Genetics, Russian Academy of Sciences, Siberian Branch, Novosibirsk 630090, Russia.
Animals (Basel). 2023 Jan 17;13(3):334. doi: 10.3390/ani13030334.
Repetitive DNA sequences constitute a sizeable portion of animal genomes, and tandemly organized satellite DNAs are a major part of them. They are usually located in constitutive heterochromatin clusters in or near the centromeres or telomeres, and less frequently in the interstitial parts of chromosome arms. They are also frequently accumulated in sex chromosomes. The function of these clusters is to sustain the architecture of the chromosomes and the nucleus, and to regulate chromosome behavior during mitosis and meiosis. The study of satellite DNA diversity is important for understanding sex chromosome evolution, interspecific hybridization, and speciation. In this work, we identified four satellite DNA families in the genomes of two snakes from different families: (Viperidae) and (Colubridae) and determine their chromosomal localization. We found that one family is localized in the centromeres of both species, whereas the others form clusters in certain chromosomes or subsets of chromosomes. BLAST with snake genome assemblies showed the conservation of such clusters, as well as a subtle presence of the satellites in the interspersed manner outside the clusters. Overall, our results show high conservation of satellite DNA in snakes and confirm the "library" model of satellite DNA evolution.
重复DNA序列构成了动物基因组的相当一部分,串联组织的卫星DNA是其中的主要部分。它们通常位于着丝粒或端粒内或附近的组成型异染色质簇中,较少位于染色体臂的间质部分。它们也经常在性染色体中积累。这些簇的功能是维持染色体和细胞核的结构,并在有丝分裂和减数分裂过程中调节染色体行为。卫星DNA多样性的研究对于理解性染色体进化、种间杂交和物种形成很重要。在这项工作中,我们在来自不同科的两种蛇(蝰蛇科和游蛇科)的基因组中鉴定出四个卫星DNA家族,并确定了它们的染色体定位。我们发现一个家族位于两个物种的着丝粒中,而其他家族则在某些染色体或染色体亚组中形成簇。与蛇基因组组装的BLAST显示了这些簇的保守性,以及卫星在簇外以散在方式的微妙存在。总体而言,我们的结果显示了蛇类中卫星DNA的高度保守性,并证实了卫星DNA进化的“文库”模型。