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植物 mRNA 中的共价核苷酸修饰:我们已知的、我们发现它们的方法,以及未来应该做的。

The covalent nucleotide modifications within plant mRNAs: What we know, how we find them, and what should be done in the future.

机构信息

Department of Biology, University of Pennsylvania, School of Arts and Sciences, 433 S. University Ave., Philadelphia, PA 19104, USA.

出版信息

Plant Cell. 2023 May 29;35(6):1801-1816. doi: 10.1093/plcell/koad044.

DOI:10.1093/plcell/koad044
PMID:36794718
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10226571/
Abstract

Although covalent nucleotide modifications were first identified on the bases of transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs), a number of these epitranscriptome marks have also been found to occur on the bases of messenger RNAs (mRNAs). These covalent mRNA features have been demonstrated to have various and significant effects on the processing (e.g. splicing, polyadenylation, etc.) and functionality (e.g. translation, transport, etc.) of these protein-encoding molecules. Here, we focus our attention on the current understanding of the collection of covalent nucleotide modifications known to occur on mRNAs in plants, how they are detected and studied, and the most outstanding future questions of each of these important epitranscriptomic regulatory signals.

摘要

尽管最初在转移 RNA(tRNA)和核糖体 RNA(rRNA)的碱基上发现了共价核苷酸修饰,但也发现了许多这些转录后修饰标记存在于信使 RNA(mRNA)的碱基上。这些共价 mRNA 特征已被证明对这些编码蛋白分子的加工(例如剪接、多聚腺苷酸化等)和功能(例如翻译、运输等)具有各种重要影响。在这里,我们关注当前对植物中存在于 mRNA 上的已知共价核苷酸修饰的理解,以及如何检测和研究这些修饰,以及这些重要的转录后调控信号中的每一个最突出的未来问题。

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本文引用的文献

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Nat Biotechnol. 2023 Mar;41(3):355-366. doi: 10.1038/s41587-022-01487-9. Epub 2022 Oct 27.
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Recent insights into noncanonical 5' capping and decapping of RNA.最近对 RNA 的非规范 5' 加帽和脱帽的深入了解。
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mA RNA modifications are measured at single-base resolution across the mammalian transcriptome.m⁶A RNA 修饰以单碱基分辨率在哺乳动物转录组中进行测量。
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Genome-Wide Identification and Expression Analysis of Pseudouridine Synthase Family in and Maize.在 和玉米中全基因组鉴定和假尿嘧啶核苷合成酶家族的表达分析。
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MdMTA-mediated m A modification enhances drought tolerance by promoting mRNA stability and translation efficiency of genes involved in lignin deposition and oxidative stress.MdMTA介导的m⁶A修饰通过促进参与木质素沉积和氧化应激的基因的mRNA稳定性和翻译效率来增强耐旱性。
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