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参与神经发育的基因调控网络中的稳健性机制。

Mechanisms of robustness in gene regulatory networks involved in neural development.

作者信息

Arcuschin Camila D, Pinkasz Marina, Schor Ignacio E

机构信息

Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), Universidad de Buenos Aires-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.

Departamento de Fisiología, Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.

出版信息

Front Mol Neurosci. 2023 Feb 6;16:1114015. doi: 10.3389/fnmol.2023.1114015. eCollection 2023.

Abstract

The functions of living organisms are affected by different kinds of perturbation, both internal and external, which in many cases have functional effects and phenotypic impact. The effects of these perturbations become particularly relevant for multicellular organisms with complex body patterns and cell type heterogeneity, where transcriptional programs controlled by gene regulatory networks determine, for example, the cell fate during embryonic development. Therefore, an essential aspect of development in these organisms is the ability to maintain the functionality of their genetic developmental programs even in the presence of genetic variation, changing environmental conditions and biochemical noise, a property commonly termed robustness. We discuss the implication of different molecular mechanisms of robustness involved in neurodevelopment, which is characterized by the interplay of many developmental programs at a molecular, cellular and systemic level. We specifically focus on processes affecting the function of gene regulatory networks, encompassing transcriptional regulatory elements and post-transcriptional processes such as miRNA-based regulation, but also higher order regulatory organization, such as gene network topology. We also present cases where impairment of robustness mechanisms can be associated with neurodevelopmental disorders, as well as reasons why understanding these mechanisms should represent an important part of the study of gene regulatory networks driving neural development.

摘要

生物体的功能会受到各种内部和外部干扰的影响,在许多情况下,这些干扰会产生功能效应和表型影响。对于具有复杂身体模式和细胞类型异质性的多细胞生物而言,这些干扰的影响尤为显著,例如在胚胎发育过程中,由基因调控网络控制的转录程序决定了细胞命运。因此,这些生物体发育的一个重要方面是,即使存在基因变异、不断变化的环境条件和生化噪声,仍能维持其遗传发育程序的功能,这一特性通常称为稳健性。我们讨论了神经发育中涉及的稳健性不同分子机制的含义,神经发育在分子、细胞和系统水平上具有许多发育程序的相互作用。我们特别关注影响基因调控网络功能的过程,包括转录调控元件和基于miRNA的调控等转录后过程,以及更高层次的调控组织,如基因网络拓扑结构。我们还介绍了稳健性机制受损可能与神经发育障碍相关的案例,以及理解这些机制为何应成为驱动神经发育的基因调控网络研究重要组成部分的原因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9175/9940843/c092d6b555fa/fnmol-16-1114015-g0001.jpg

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