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与中层水母相关的微生物组的生物活性分析及非靶向代谢组学研究

Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish .

机构信息

GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Am Kiel-Kanal 44, 24106 Kiel, Germany.

Faculty of Mathematics and Natural Science, Kiel University, Christian-Albrechts-Platz 4, 24118 Kiel, Germany.

出版信息

Mar Drugs. 2023 Feb 17;21(2):129. doi: 10.3390/md21020129.

Abstract

The marine mesopelagic zone extends from water depths of 200 m to 1000 m and is home to a vast number and diversity of species. It is one of the least understood regions of the marine environment with untapped resources of pharmaceutical relevance. The mesopelagic jellyfish is a well-known and widely distributed species in the mesopelagic zone; however, the diversity or the pharmaceutical potential of its cultivable microbiota has not been explored. In this study, we isolated microorganisms associated with the inner and outer umbrella of collected in Irminger Sea by a culture-dependent approach, and profiled their chemical composition and biological activities. Sixteen mostly gram-negative bacterial isolates were selected and subjected to an OSMAC cultivation regime approach using liquid and solid marine broth (MB) and glucose-yeast-malt (GYM) media. Their ethyl acetate (EtOAc) extracts were assessed for cytotoxicity and antimicrobial activity against fish and human pathogens. All, except one extract, displayed diverse levels of antimicrobial activities. Based on low IC values, four most bioactive gram-negative strains; sp. SU124, sp. SU126, sp. SU143 and sp. SU137, were prioritized for an in-depth comparative and untargeted metabolomics analysis using feature-based molecular networking. Various chemical classes such as diketopiperazines, polyhydroxybutyrates (PHBs), bile acids and other lipids were putatively annotated, highlighting the biotechnological potential in -associated microbiota as well as gram-negative bacteria. This is the first study providing an insight into the cultivable bacterial community associated with the mesopelagic jellyfish and, indeed, the first to mine the metabolome and antimicrobial activities of these microorganisms.

摘要

海洋中层区从水深 200 米延伸到 1000 米,是大量和多样化物种的家园。它是海洋环境中最不为人知的区域之一,拥有未开发的药物相关资源。中层水母是中层区中一种众所周知且广泛分布的物种;然而,其可培养微生物群落的多样性或药物潜力尚未得到探索。在这项研究中,我们通过依赖培养的方法从 Irminger 海域采集的内伞和外伞中分离出与微生物相关的物质,并对其化学组成和生物活性进行了分析。选择了 16 种主要的革兰氏阴性细菌分离物,并使用液体和固体海洋肉汤 (MB) 和葡萄糖-酵母-麦芽 (GYM) 培养基进行 OSMAC 培养方案方法。评估了它们的乙酸乙酯 (EtOAc) 提取物对鱼类和人类病原体的细胞毒性和抗菌活性。除了一种提取物外,所有提取物都显示出不同程度的抗菌活性。基于低 IC 值,四种最具生物活性的革兰氏阴性菌株;sp. SU124、sp. SU126、sp. SU143 和 sp. SU137,被优先进行深入的比较和非靶向代谢组学分析,使用基于特征的分子网络。各种化学类如二酮哌嗪、聚羟基丁酸酯 (PHB)、胆酸和其他脂质被假定为注释,突出了与中层水母相关的微生物群以及革兰氏阴性细菌的生物技术潜力。这是首次研究提供了对与中层水母相关的可培养细菌群落的深入了解,并且确实是首次挖掘这些微生物的代谢组和抗菌活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd4f/9958851/2b6f76aa530d/marinedrugs-21-00129-g001.jpg

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