Chen Jiao-Jiao, Zhang Zhang, Wang Yi, Yuan Xiao-Long, Wang Juan, Yang Yu-Ming, Zheng Yuan
College of Forestry, Southwest Forestry University, Kunming, China.
Yunnan Key Laboratory of Forest Plant Cultivation, Development and Utilization, Yunnan Academy of Forestry and Grassland, Kunming, China.
Mycobiology. 2023 Feb 15;51(1):49-59. doi: 10.1080/12298093.2023.2175434. eCollection 2023.
, an edible and medicinal fungus with significant economic value and application prospects, is rich in terpenoids, benzenoids, lignans, polysaccharides, and benzoquinone, succinic and maleic derivatives. In this study, the transcriptome of cultured on the wood substrates of (YZM), (XZM), and (NZM) was sequenced using the high-throughput sequencing technology Illumina HiSeq 2000, and the data were assembled by de novo strategy to obtain 78,729 Unigenes with an N50 of 4,463 bp. Compared with public databases, about 11,435, 6,947, and 5,994 Unigenes were annotated to the Non-Redundant (NR), Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genome (KEGG), respectively. The comprehensive analysis of the mycelium terpene biosynthesis-related genes in revealed that the expression of acetyl-CoA acetyltransferase (AACT), acyl-CoA dehydrogenase (MCAD), 3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA), mevalonate pyrophosphate decarboxylase (MVD), and isopentenyl diphosphate isomerase (IDI) was significantly higher on NZM compared to the other two wood substrates. Similarly, the expression of geranylgeranyltransferase (GGT) was significantly higher on YZM compared to NZM and XZM, and the expression of farnesyl transferase (FTase) was significantly higher on XZM. Furthermore, the expressions of 2,3-oxidized squalene cyclase (OCS), squalene synthase (SQS), and squalene epoxidase (SE) were significantly higher on NZM. Overall, this study provides a potential approach to explore the molecular regulation mechanism of terpenoid biosynthesis in .
[具体菌类名称]是一种具有重要经济价值和应用前景的食药用真菌,富含萜类、苯类、木脂素、多糖以及苯醌、琥珀酸和马来酸衍生物。在本研究中,利用Illumina HiSeq 2000高通量测序技术对在[木材名称1](YZM)、[木材名称2](XZM)和[木材名称3](NZM)的木材基质上培养的[菌类名称]的转录组进行测序,并采用从头组装策略对数据进行组装,得到了78,729个Unigene,N50为4,463 bp。与公共数据库相比,分别有大约11,435、6,947和5,994个Unigene被注释到非冗余(NR)、基因本体论(GO)和京都基因与基因组百科全书(KEGG)中。对[菌类名称]菌丝体萜类生物合成相关基因的综合分析表明,与其他两种木材基质相比,乙酰辅酶A乙酰转移酶(AACT)、酰基辅酶A脱氢酶(MCAD)、3-羟基-3-甲基戊二酰辅酶A(HMG-CoA)、甲羟戊酸焦磷酸脱羧酶(MVD)和异戊烯基二磷酸异构酶(IDI)在NZM上的表达显著更高。同样,香叶基香叶基转移酶(GGT)在YZM上的表达显著高于NZM和XZM,法尼基转移酶(FTase)在XZM上的表达显著更高。此外,2,3-氧化鲨烯环化酶(OCS)、鲨烯合酶(SQS)和鲨烯环氧酶(SE)在NZM上的表达显著更高。总体而言,本研究为探索[菌类名称]萜类生物合成的分子调控机制提供了一种潜在方法。