Yuan Xiaolong, Li Yunqing, Luo Ting, Bi Wei, Yu Jiaojun, Wang Yi
Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Huanggang Normal University, Huanggang, Hubei, People' Republic of China.
Yunnan Key Laboratory of Forest Plant Cultivation and Utilization/National Forestry and Grassland Administration Key Laboratory of Yunnan Rare and Endangered Species Conservation and Propagation, Yunnan Academy of Forestry and Grassland, Kunming, Yunnan, People' Republic of China.
Mycobiology. 2023 Feb 15;51(1):36-48. doi: 10.1080/12298093.2023.2175428. eCollection 2023.
is a lichen symbiosis, that inhabits extreme environments and can absorb UV-B. We reported the sequencing and assembly of genome. The whole genome was approximately 44.63 Mb, with a GC content of 40.69%. Genome assembly generated 207 scaffolds with an N50 length of 563,100 bp, N90 length of 122,672 bp. The genome comprised 9,581 genes, some encoded enzymes involved in the secondary metabolism such as terpene, polyketides. To further understand the UV-B absorbing and adaptability to extreme environments mechanisms of , we searched the secondary metabolites genes and gene-cluster from the genome using genome-mining and bioinformatics analysis. The results revealed that 7 NR-PKSs, 12 HR-PKSs and 2 hybrid PKS-PKSs from were isolated, they belong to Type I PKS (T1PKS) according to the domain architecture; phylogenetic analysis and BGCs comparison linked the putative products to two NR-PKSs and three HR-PKSs, the putative products of two NR-PKSs were emodin xanthrone (most likely parietin) and mycophelonic acid, the putative products of three HR-PKSs were soppilines, (+)-asperlin and macrolactone brefeldin A, respectively. 5 PKSs from build a correlation between the SMs carbon skeleton and PKS genes based on the domain architecture, phylogenetic and BGC comparison. Although the function of 16 PKSs remains unclear, the findings emphasize that the genes from represent an unexploited source of novel polyketide and utilization of lichen gene resources.
是一种地衣共生体,栖息于极端环境中,能够吸收UV - B。我们报道了其基因组的测序与组装情况。整个基因组约为44.63 Mb,GC含量为40.69%。基因组组装产生了207个支架,N50长度为563,100 bp,N90长度为122,672 bp。该基因组包含9581个基因,一些基因编码参与次生代谢的酶,如萜类、聚酮化合物。为了进一步了解其吸收UV - B以及适应极端环境的机制,我们利用基因组挖掘和生物信息学分析从基因组中搜索次生代谢产物基因和基因簇。结果显示,从该物种中分离出了7个NR - PKS、12个HR - PKS和2个杂合PKS - PKS,根据结构域架构它们属于I型PKS(T1PKS);系统发育分析和BGCs比较将推定产物与两个NR - PKS和三个HR - PKS联系起来,两个NR - PKS的推定产物分别是大黄素氧杂蒽酮(很可能是石茸素)和霉酚酸,三个HR - PKS的推定产物分别是索皮林、(+)-曲霉林和大环内酯布雷菲德菌素A。基于结构域架构、系统发育和BGC比较,该物种的5个PKS建立了次生代谢产物碳骨架与PKS基因之间的关联。尽管16个PKS的功能仍不清楚,但这些发现强调了该物种的基因代表了一种未被开发的新型聚酮化合物来源以及地衣基因资源的利用。