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揭示细菌与噬菌体军备竞赛的秘密。

Unveil the Secret of the Bacteria and Phage Arms Race.

机构信息

College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China.

Beijing Advanced Innovation Center for Soft Matter Science and Engineering (BAIC-SM), Beijing University of Chemical Technology, Beijing 100029, China.

出版信息

Int J Mol Sci. 2023 Feb 22;24(5):4363. doi: 10.3390/ijms24054363.

Abstract

Bacteria have developed different mechanisms to defend against phages, such as preventing phages from being adsorbed on the surface of host bacteria; through the superinfection exclusion (Sie) block of phage's nucleic acid injection; by restricting modification (R-M) systems, CRISPR-Cas, aborting infection (Abi) and other defense systems to interfere with the replication of phage genes in the host; through the quorum sensing (QS) enhancement of phage's resistant effect. At the same time, phages have also evolved a variety of counter-defense strategies, such as degrading extracellular polymeric substances (EPS) that mask receptors or recognize new receptors, thereby regaining the ability to adsorb host cells; modifying its own genes to prevent the R-M systems from recognizing phage genes or evolving proteins that can inhibit the R-M complex; through the gene mutation itself, building nucleus-like compartments or evolving anti-CRISPR (Acr) proteins to resist CRISPR-Cas systems; and by producing antirepressors or blocking the combination of autoinducers (AIs) and its receptors to suppress the QS. The arms race between bacteria and phages is conducive to the coevolution between bacteria and phages. This review details bacterial anti-phage strategies and anti-defense strategies of phages and will provide basic theoretical support for phage therapy while deeply understanding the interaction mechanism between bacteria and phages.

摘要

细菌已经发展出不同的机制来防御噬菌体,例如防止噬菌体被吸附在宿主细菌的表面;通过超感染排斥(Sie)阻止噬菌体核酸的注入;通过限制修饰(R-M)系统、CRISPR-Cas、中止感染(Abi)和其他防御系统来干扰噬菌体基因在宿主中的复制;通过群体感应(QS)增强噬菌体的抗性效果。同时,噬菌体也进化出了多种反防御策略,例如降解掩盖受体或识别新受体的胞外聚合物质(EPS),从而重新获得吸附宿主细胞的能力;修饰自身基因以防止 R-M 系统识别噬菌体基因或进化出能够抑制 R-M 复合物的蛋白质;通过基因突变本身,构建核样隔室或进化出抗 CRISPR(Acr)蛋白来抵抗 CRISPR-Cas 系统;并通过产生抗阻遏物或阻断自动诱导物(AIs)与其受体的结合来抑制 QS。细菌和噬菌体之间的军备竞赛有利于细菌和噬菌体之间的共同进化。本综述详细介绍了细菌的抗噬菌体策略和噬菌体的反防御策略,在深入了解细菌和噬菌体相互作用机制的同时,为噬菌体治疗提供了基本的理论支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ba8/10002423/c97c6a9c6786/ijms-24-04363-g001.jpg

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