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生物信息学及其在乳酸菌进化与益生菌潜力研究中的作用。

Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria.

作者信息

Mendoza Remilyn M, Kim Sang Hoon, Vasquez Robie, Hwang In-Chan, Park Young-Seo, Paik Hyun-Dong, Moon Gi-Seong, Kang Dae-Kyung

机构信息

Department of Animal Resources Science, Dankook University, 119 Dandae-ro, Cheonan, 31116 Republic of Korea.

Department of Food Science and Biotechnology, Gachon University, Seongnam, 13120 Republic of Korea.

出版信息

Food Sci Biotechnol. 2022 Aug 10;32(4):389-412. doi: 10.1007/s10068-022-01142-8. eCollection 2023 Mar.

Abstract

Due to their numerous well-established applications in the food industry, there have been many studies regarding the adaptation and evolution of lactic acid bacteria (LAB) in a wide variety of hosts and environments. Progress in sequencing technology and continual decreases in its costs have led to the availability of LAB genome sequence data. Bioinformatics has been central to the extraction of valuable information from these raw genome sequence data. This paper presents the roles of bioinformatics tools and databases in understanding the adaptation and evolution of LAB, as well as the bioinformatics methods used in the initial screening of LAB for probiotic potential. Moreover, the advantages, challenges, and limitations of employing bioinformatics for these purposes are discussed.

摘要

由于乳酸菌(LAB)在食品工业中有众多成熟的应用,因此针对乳酸菌在各种宿主和环境中的适应性与进化开展了许多研究。测序技术的进步及其成本的持续降低使得乳酸菌基因组序列数据得以获取。生物信息学对于从这些原始基因组序列数据中提取有价值的信息至关重要。本文介绍了生物信息学工具和数据库在理解乳酸菌的适应性与进化方面所起的作用,以及用于初步筛选具有益生菌潜力的乳酸菌的生物信息学方法。此外,还讨论了为此目的采用生物信息学的优势、挑战和局限性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffde/9992694/c970d6789600/10068_2022_1142_Fig1_HTML.jpg

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