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多祖裔全基因组关联分析提高了影响肺功能和慢性阻塞性肺疾病风险的基因和通路的分辨率。

Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk.

机构信息

Department of Population Health Sciences, University of Leicester, Leicester, UK.

Division of Respiratory Medicine and NIHR Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, UK.

出版信息

Nat Genet. 2023 Mar;55(3):410-422. doi: 10.1038/s41588-023-01314-0. Epub 2023 Mar 13.

Abstract

Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 580,869 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.

摘要

肺功能损伤是慢性阻塞性肺疾病(COPD)的基础,并可预测死亡率。在迄今为止最大的多血统全基因组关联荟萃分析中,对肺功能进行了研究,该分析包含了 580869 名参与者,我们确定了 1020 个独立的关联信号,这些信号涉及 559 个基因,这些基因是通过系统的变异到基因映射框架中的≥2 个标准来支持的。这些基因在 29 条途径中得到了富集。个体变异在血统、年龄和吸烟组之间存在异质性,而作为遗传风险评分的总体情况则显示出与所有血统群体的 COPD 有很强的关联。我们针对选定的相关变异以及特定于性状和途径的遗传风险评分进行了表型全基因组关联研究,以推断干预肺功能相关途径的可能后果。我们强调了新的潜在因果变异、基因、蛋白质和途径,包括现有药物针对的途径。这些发现使我们更接近于了解肺功能和 COPD 的潜在机制,应该为功能基因组学实验和潜在的未来 COPD 治疗提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6960/10011137/b5af2a8d48f2/41588_2023_1314_Fig1_HTML.jpg

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