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是一个保守的小开放阅读框基因,它与CASA途径相互作用,以调节……中的肌肉稳态和上皮组织生长。

is a conserved small open reading frame gene that interacts with the CASA pathway to regulate muscle homeostasis and epithelial tissue growth in .

作者信息

Pueyo Jose I, Salazar Jorge, Grincho Carolina, Berni Jimena, Towler Benjamin P, Newbury Sarah F

机构信息

Brighton and Sussex Medical School, University of Sussex, Brighton, United Kingdom.

Department of Biochemistry and Biomedicine, School of Life Sciences, University of Sussex, Brighton, United Kingdom.

出版信息

Front Cell Dev Biol. 2023 Mar 10;11:1117454. doi: 10.3389/fcell.2023.1117454. eCollection 2023.

Abstract

Recent advances in proteogenomic techniques and bioinformatic pipelines have permitted the detection of thousands of translated small Open Reading Frames (smORFs), which contain less than 100 codons, in eukaryotic genomes. Hundreds of these actively translated smORFs display conserved sequence, structure and evolutionary signatures indicating that the translated peptides could fulfil important biological roles. Despite their abundance, only tens of smORF genes have been fully characterised; these act mainly as regulators of canonical proteins involved in essential cellular processes. Importantly, some of these smORFs display conserved functions with their mutations being associated with pathogenesis. Thus, investigating smORF roles in will not only expand our understanding of their functions but it may have an impact in human health. Here we describe the function of a novel and essential smORF gene named (). belongs to an ancient gene family whose members have expanded throughout the Protostomia clade. encodes a transmembrane peptide which is localized in endo-lysosomes and perinuclear and plasma membranes. is dynamically expressed in mesodermal tissues and imaginal discs. Targeted knockdown (KD) in these organs results in changes in nuclear morphology and endo-lysosomal distributions correlating with the loss of sarcomeric homeostasis in muscles and reduction of mitosis in wing discs. Consequently, KD mutants display severe reduction of motility, and shorter wings. Finally, our genetic interaction experiments show that function is closely associated to the CASA pathway, a conserved mechanism involved in turnover of mis-folded proteins and linked to muscle dystrophies and neurodegenerative diseases. Thus, this study shows the relevance of smORFs in regulating important cellular functions and supports the systematic characterisation of this class of genes to understand their functions and evolution.

摘要

蛋白质基因组学技术和生物信息学流程的最新进展,使得在真核生物基因组中能够检测到数千个翻译后的小开放阅读框(smORF),这些小开放阅读框包含少于100个密码子。其中数百个活跃翻译的smORF显示出保守的序列、结构和进化特征,表明翻译后的肽段可能发挥重要的生物学作用。尽管它们数量众多,但只有数十个smORF基因得到了充分表征;这些基因主要作为参与基本细胞过程的经典蛋白质的调节因子。重要的是,其中一些smORF显示出保守功能,其突变与发病机制相关。因此,研究smORF在[具体内容缺失]中的作用不仅会扩展我们对其功能的理解,还可能对人类健康产生影响。在这里,我们描述了一个名为[具体基因名缺失]([具体基因名缺失])的新型必需smORF基因的功能。[具体基因名缺失]属于一个古老的基因家族,其成员在原口动物进化枝中有所扩展。[具体基因名缺失]编码一种跨膜肽,定位于内溶酶体以及核周和质膜。[具体基因名缺失]在中胚层组织和成虫盘动态表达。在这些器官中靶向敲低(KD)[具体基因名缺失]会导致核形态和内溶酶体分布的变化,这与肌肉中肌节稳态的丧失以及翅盘中有丝分裂的减少相关。因此,[具体基因名缺失] KD突变体表现出运动能力严重下降和翅膀变短。最后,我们的遗传相互作用实验表明,[具体基因名缺失]的功能与CASA途径密切相关,CASA途径是一种保守机制,参与错误折叠蛋白质的周转,并与肌肉营养不良和神经退行性疾病相关。因此,这项研究表明了smORF在调节重要细胞功能方面的相关性,并支持对这类基因进行系统表征以了解其功能和进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bac9/10036370/3150240a27b2/fcell-11-1117454-g001.jpg

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