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保守转录因子促进分化细胞的命运稳定性并限制其重编程潜力。

Conserved transcription factors promote cell fate stability and restrict reprogramming potential in differentiated cells.

机构信息

Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 North Torrey Pines Road, La Jolla, CA, 92037, USA.

Division of Cardiology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.

出版信息

Nat Commun. 2023 Mar 27;14(1):1709. doi: 10.1038/s41467-023-37256-8.

Abstract

Defining the mechanisms safeguarding cell fate identity in differentiated cells is crucial to improve 1) - our understanding of how differentiation is maintained in healthy tissues or altered in a disease state, and 2) - our ability to use cell fate reprogramming for regenerative purposes. Here, using a genome-wide transcription factor screen followed by validation steps in a variety of reprogramming assays (cardiac, neural and iPSC in fibroblasts and endothelial cells), we identified a set of four transcription factors (ATF7IP, JUNB, SP7, and ZNF207 [AJSZ]) that robustly opposes cell fate reprogramming in both lineage and cell type independent manners. Mechanistically, our integrated multi-omics approach (ChIP, ATAC and RNA-seq) revealed that AJSZ oppose cell fate reprogramming by 1) - maintaining chromatin enriched for reprogramming TF motifs in a closed state and 2) - downregulating genes required for reprogramming. Finally, KD of AJSZ in combination with MGT overexpression, significantly reduced scar size and improved heart function by 50%, as compared to MGT alone post-myocardial infarction. Collectively, our study suggests that inhibition of barrier to reprogramming mechanisms represents a promising therapeutic avenue to improve adult organ function post-injury.

摘要

确定分化细胞中细胞命运身份的保护机制对于提高以下两个方面的理解至关重要

1)我们对健康组织中分化如何维持以及在疾病状态下如何改变的理解;2)我们利用细胞命运重编程进行再生的能力。在这里,我们使用全基因组转录因子筛选,然后在各种重编程测定(心肌、神经和 iPSC 在成纤维细胞和内皮细胞中的测定)中进行验证步骤,鉴定了一组四个转录因子(ATF7IP、JUNB、SP7 和 ZNF207 [AJSZ]),它们以谱系和细胞类型独立的方式强有力地反对细胞命运重编程。从机制上讲,我们的综合多组学方法(ChIP、ATAC 和 RNA-seq)揭示了 AJSZ 通过以下两种方式来抵抗细胞命运重编程:1)维持富含重编程 TF 基序的染色质处于关闭状态;2)下调重编程所需的基因。最后,与单独的 MGT 相比,AJSZ 的 KD 与 MGT 的过表达相结合,可使梗死后的疤痕大小减少 50%,并显著改善心脏功能。总的来说,我们的研究表明,抑制重编程机制的障碍代表了一种有前途的治疗方法,可以改善成年器官受伤后的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5576/10043290/7cbc33684a17/41467_2023_37256_Fig1_HTML.jpg

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