Zhang Shi-Min, Huang Shir-Ly
Institute of Clinical Medicine, National Yang Ming Chiao Tung University, Yangming Campus, Taipei, Taiwan.
Institute of Microbiology and Immunology, National Yang Ming Chiao Tung University, Yangming Campus, Taipei, Taiwan.
Microbiol Spectr. 2023 Mar 28;11(2):e0355822. doi: 10.1128/spectrum.03558-22.
spp. are obligate, anaerobic, Gram-negative bacteria found in the human oral cavity and gut. Recent studies have indicated that gut promote human homeostasis by producing beneficial metabolites, specifically short-chain fatty acids (SCFAs), by lactate fermentation. The gut lumen is a dynamic environment with fluctuating nutrient levels, so the microbes present shifting growth rates and significant variations of gene expression. The current knowledge of lactate metabolism by has focused on log phase growth. However, the gut microbes are mainly in the stationary phase. In this study, we investigated the transcriptomes and major metabolites of Veillonella dispar ATCC 17748 during growth from log to stationary phases with lactate as the main carbon source. Our results revealed that reprogrammed its lactate metabolism during the stationary phase. Lactate catabolic activity and propionate production were significantly decreased during the early stationary phase but were partially restored during the stationary phase. The propionate/acetate production ratio was lowered from 1.5 during the log phase to 0.9 during the stationary phase. Pyruvate secretion was also greatly decreased during the stationary phase. Furthermore, we have demonstrated that the gene expression of is reprogrammed during growth, as evidenced by the distinct transcriptomes present during the log, early stationary, and stationary phases. In particular, propionate metabolism (the propanediol pathway) was downregulated during the early stationary phase, which explains the decrease in propionate production during the stationary phase. The fluctuations in lactate fermentation during the stationary phase and the associated gene regulation expand our understanding of the metabolism of commensal anaerobes in changing environments. Short-chain fatty acids produced by gut commensal bacteria play an important role in human physiology. Gut and the metabolites acetate and propionate, produced by lactate fermentation, are associated with human health. Most gut bacteria in humans are in the stationary phase. Lactate metabolism by spp. during the stationary phase is poorly understood and was therefore the focus of the study. To this end, we used a commensal anaerobic bacterium and explored its short-chain fatty acid production and gene regulation in order to provide a better understanding of lactate metabolism dynamics during nutrient limitation.
某些菌属是专性厌氧菌,为革兰氏阴性菌,存在于人体口腔和肠道中。最近的研究表明,肠道中的这些菌属通过乳酸发酵产生有益代谢物,特别是短链脂肪酸(SCFAs),从而促进人体的内环境稳定。肠道腔是一个营养水平波动的动态环境,因此其中的微生物生长速率不断变化,基因表达也存在显著差异。目前关于这些菌属乳酸代谢的知识主要集中在对数生长期。然而,肠道微生物主要处于稳定期。在本研究中,我们以乳酸作为主要碳源,研究了差异韦荣球菌ATCC 17748从对数生长期到稳定期生长过程中的转录组和主要代谢物。我们的结果表明,该菌属在稳定期重新编程了其乳酸代谢。在稳定期早期,乳酸分解代谢活性和丙酸产量显著下降,但在稳定期后期部分恢复。丙酸/乙酸产量比从对数期时的1.5降至稳定期时的0.9。丙酮酸分泌在稳定期也大幅减少。此外,我们证明了该菌属的基因表达在生长过程中被重新编程,对数期、稳定期早期和稳定期存在不同的转录组就证明了这一点。特别是,丙酸代谢(丙二醇途径)在稳定期早期被下调,这解释了稳定期丙酸产量下降的原因。稳定期乳酸发酵的波动及相关基因调控扩展了我们对共生厌氧菌在变化环境中代谢的理解。肠道共生细菌产生的短链脂肪酸在人体生理学中发挥着重要作用。肠道中的这些菌属以及乳酸发酵产生的代谢物乙酸和丙酸与人类健康有关。人类肠道中的大多数细菌处于稳定期。目前对这些菌属在稳定期的乳酸代谢了解甚少,因此这是本研究的重点。为此,我们使用了一种共生厌氧菌,探索其短链脂肪酸的产生和基因调控,以便更好地理解营养限制期间乳酸代谢的动态变化。