sp. nov.,一种从日本儿童口腔中分离出的厌氧革兰氏阴性球菌。

sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children.

机构信息

Department of Microbiology, School of Pharmacy, Aichi-Gakuin University, 1-100 Kusumoto-cho, Chikusa-ku, Nagoya, Aichi 464-8650, Japan.

Department of Oral Medical Science, School of Dentistry, Ohu University, 31-1 Misumido, Tomita-machi, Koriyama, Fukushima 963-8611, Japan.

出版信息

Int J Syst Evol Microbiol. 2021 Jan;71(1). doi: 10.1099/ijsem.0.004583. Epub 2020 Dec 2.

Abstract

Two strains of previously unknown Gram-negative cocci, T1-7 and S6-16, were isolated from the oral cavity of healthy Japanese children. The two strains showed atypical phenotypic characteristics of members of the genus , including catalase production. Sequencing of their 16S rRNA genes confirmed that they belong to genus . Under anaerobic conditions, the two strains produced acetic acid and propionic acid as metabolic end-products in a trypticase-yeast extract-haemin medium containing 1 % (w/v) glucose, 1 % (w/v) fructose and 1 % (v/v) sodium lactate. Comparative analysis of the 16S rRNA, , and gene sequences revealed that the two strains are phylogenetically homogeneous and comprise a distinct, novel lineage within the genus . The sequences from the two strains shared the highest similarity, at 99.9, 95.8, 96.9 and 96.7 %, using the partial 16S rRNA, , and gene sequences, respectively, with the type strains of the two most closely related species, ATCC 17748 and JCM 31738. Furthermore, strain T1-7 shared the highest average nucleotide identity (ANI) value (94.06 %) with type strain of the most closely related species, . At the same time, strain T1-7 showed the highest digital DNA-DNA hybridization (dDDH) value (55.5 %) with the type strain of . The two strains reported in this study were distinguished from the previously reported species from the genus based on catalase production, partial , and sequences, average ANI and dDDH values. Based on these observations, the two strains represent a novel species, for which the name sp. nov. is proposed. The type strain is T1-7 (JCM 33966=CCUG 74597).

摘要

两种先前未知的革兰氏阴性球菌,T1-7 和 S6-16,从健康日本儿童的口腔中分离出来。这两种菌株表现出典型的属成员表型特征,包括过氧化氢酶的产生。它们的 16S rRNA 基因测序证实它们属于属。在厌氧条件下,两种菌株在含有 1%(w/v)葡萄糖、1%(w/v)果糖和 1%(v/v)乳酸钠的胰蛋白酶-酵母提取物-血红素培养基中产生乙酸和丙酸作为代谢终产物。16S rRNA、、和基因序列的比较分析表明,这两种菌株在系统发育上是同质的,并且在属内构成了一个独特的新谱系。两种菌株的序列与两种最密切相关的物种的模式株共享最高的相似性,分别为 99.9%、95.8%、96.9%和 96.7%,使用部分 16S rRNA、、和基因序列。此外,菌株 T1-7 与最密切相关的物种的模式株共享最高的平均核苷酸同一性(ANI)值(94.06%)。同时,菌株 T1-7 与最密切相关的物种的模式株显示出最高的数字 DNA-DNA 杂交(dDDH)值(55.5%)。本研究报道的两种菌株与属中先前报道的物种在过氧化氢酶产生、部分、和基因序列、平均 ANI 和 dDDH 值方面有所不同。基于这些观察结果,这两种菌株代表了一个新的物种,建议将其命名为。模式株为 T1-7(JCM 33966=CCUG 74597)。

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