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深海热液生态系统中嗜中性化能自养菌对环辛硫的氧化与还原的转录组分析

Transcriptome Analysis of Cyclooctasulfur Oxidation and Reduction by the Neutrophilic Chemolithoautotrophic from Deep-Sea Hydrothermal Ecosystems.

作者信息

Wang Shasha, Jiang Lijing, Cui Liang, Alain Karine, Xie Shaobin, Shao Zongze

机构信息

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China.

State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, China.

出版信息

Antioxidants (Basel). 2023 Mar 3;12(3):627. doi: 10.3390/antiox12030627.

Abstract

Chemolithoautotrophic are widespread and predominant in worldwide hydrothermal vents, and they are key players in the turnover of zero-valence sulfur. However, at present, the mechanism of cyclooctasulfur activation and catabolism in bacteria is not clearly understood. Here, we investigated these processes in a hydrothermal vent isolate named ST-419. A transcriptome analysis revealed that multiple genes related to biofilm formation were highly expressed during both sulfur oxidation and reduction. Additionally, biofilms containing cells and EPS coated on sulfur particles were observed by SEM, suggesting that biofilm formation may be involved in S activation in species. Meanwhile, several genes encoding the outer membrane proteins of OprD family were also highly expressed, and among them, gene IMZ28_RS00565 exhibited significantly high expressions by 2.53- and 7.63-fold changes under both conditions, respectively, which may play a role in sulfur uptake. However, other mechanisms could be involved in sulfur activation and uptake, as experiments with dialysis bags showed that direct contact between cells and sulfur particles was not mandatory for sulfur reduction activity, whereas cell growth via sulfur oxidation did require direct contact. This indirect reaction could be ascribed to the role of HS and/or other thiol-containing compounds, such as cysteine and GSH, which could be produced in the culture medium during sulfur reduction. In the periplasm, the sulfur-oxidation-multienzyme complexes and are likely responsible for thiosulfate oxidation and S oxidation, respectively. In addition, among the four gene clusters encoding polysulfide reductases, only was significantly upregulated under the sulfur reduction condition, implying its essential role in sulfur reduction. These results expand our understanding of the interactions of with the zero-valence sulfur and their adaptability to deep-sea hydrothermal environments.

摘要

化能无机自养菌在全球热液喷口中广泛存在且占主导地位,它们是零价硫周转的关键参与者。然而,目前细菌中环辛硫的活化和分解代谢机制尚不清楚。在此,我们对一种名为ST - 419的热液喷口分离菌中的这些过程进行了研究。转录组分析表明,在硫氧化和还原过程中,多个与生物膜形成相关的基因均高度表达。此外,通过扫描电子显微镜观察到硫颗粒上包裹着含有细胞和胞外聚合物的生物膜,这表明生物膜形成可能参与了该物种中的硫活化过程。同时,几个编码OprD家族外膜蛋白的基因也高度表达,其中基因IMZ28_RS00565在两种条件下分别表现出显著的高表达,变化倍数分别为2.53倍和7.63倍,这可能在硫摄取中发挥作用。然而,硫的活化和摄取可能还涉及其他机制,因为透析袋实验表明,细胞与硫颗粒之间的直接接触对于硫还原活性并非必需,而通过硫氧化进行的细胞生长确实需要直接接触。这种间接反应可能归因于HS和/或其他含硫醇的化合物(如半胱氨酸和谷胱甘肽)的作用,它们可能在硫还原过程中在培养基中产生。在周质中,硫氧化多酶复合物和可能分别负责硫代硫酸盐氧化和硫氧化。此外,在四个编码多硫化物还原酶的基因簇中,只有在硫还原条件下显著上调,这意味着它在硫还原中起着重要作用。这些结果扩展了我们对与零价硫相互作用及其对深海热液环境适应性的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e57/10045233/88d34a04cf7c/antioxidants-12-00627-g001.jpg

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