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巴西 13 年间人类轮状病毒 G8 株的基因组特征:具有 DS-1 样骨架的新型牛样 G8P[8] 株的检测。

Genomic Constellation of Human Rotavirus G8 Strains in Brazil over a 13-Year Period: Detection of the Novel Bovine-like G8P[8] Strains with the DS-1-like Backbone.

机构信息

Enteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.

General Coordination of Public Health Laboratories, Department of Strategic Articulation in Epidemiology and Health Surveillance, Ministry of Health, Brasília 70068-900, Brazil.

出版信息

Viruses. 2023 Mar 1;15(3):664. doi: 10.3390/v15030664.

Abstract

Rotavirus (RVA) G8 is frequently detected in animals, but only occasionally in humans. G8 strains, however, are frequently documented in nations in Africa. Recently, an increase in G8 detection was observed outside Africa. The aims of the study were to monitor G8 infections in the Brazilian human population between 2007 and 2020, undertake the full-genotype characterization of the four G8P[4], six G8P[6] and two G8P[8] RVA strains and conduct phylogenetic analysis in order to understand their genetic diversity and evolution. A total of 12,978 specimens were screened for RVA using ELISA, PAGE, RT-PCR and Sanger sequencing. G8 genotype represented 0.6% (15/2434) of the entirely RVA-positive samples. G8P[4] comprised 33.3% (5/15), G8P[6] 46.7% (7/15) and G8P[8] 20% (3/15). All G8 strains showed a short RNA pattern. All twelve selected G8 strains displayed a DS-1-like genetic backbone. The whole-genotype analysis on a DS-1-like backbone identified four different genotype-linage constellations. According to VP7 analysis, the Brazilian G8P[8] strains with the DS-1-like backbone strains were derived from cattle and clustered with newly DS-1-like G1/G3/G9/G8P[8] strains and G2P[4] strains. Brazilian IAL-R193/2017/G8P[8] belonged to a VP1/R2.XI lineage and were grouped with bovine-like G8P[8] strains with the DS-1-like backbone strains detected in Asia. Otherwise, the Brazilian IAL-R558/2017/G8P[8] possess a "Distinct" VP1/R2 lineage never previously described and grouped apart from any of the DS-1-like reference strains. Collectively, our findings suggest that the Brazilian bovine-like G8P[8] strains with the DS-1-like backbone strains are continuously evolving and likely reassorting with local RVA strains rather than directly relating to imports from Asia. The Brazilian G8P[6]-DS-1-like strains have been reassorted with nearby co-circulating American strains of the same DS-1 genotype constellation. However, phylogenetic analyses revealed that these strains have some genetic origin from Africa. Finally, rather than being African-born, Brazilian G8P[4]-DS-1-like strains were likely imported from Europe. None of the Brazilian G8 strains examined here exhibited signs of recent zoonotic reassortment. G8 strains continued to be found in Brazil according to their intermittent and localized pattern, thus, does not suggest that a potential emergence is taking place in the country. Our research demonstrates the diversity of G8 RVA strains in Brazil and adds to the understanding of G8P[4]/P[6]/P[8] RVA genetic diversity and evolution on a global scale.

摘要

轮状病毒(RVA)G8 常在动物中被检测到,但在人类中很少见。然而,G8 株在非洲国家经常被记录到。最近,在非洲以外地区也观察到 G8 的检出率增加。本研究的目的是监测 2007 年至 2020 年间巴西人群中 G8 感染情况,对 4 株 G8P[4]、6 株 G8P[6]和 2 株 G8P[8]RVA 株进行全基因组特征分析,以了解其遗传多样性和进化。使用 ELISA、PAGE、RT-PCR 和 Sanger 测序对 12978 份标本进行了 RVA 筛查。G8 基因型占全部 RVA 阳性样本的 0.6%(15/2434)。G8P[4]占 33.3%(5/15),G8P[6]占 46.7%(7/15),G8P[8]占 20%(3/15)。所有 G8 株均表现出短 RNA 模式。所有 12 株选定的 G8 株均显示出 DS-1 样遗传骨架。基于 DS-1 样骨架的全基因组分析确定了四种不同的基因型谱系组合。根据 VP7 分析,巴西 G8P[8]与 DS-1 样株相关的菌株源自牛,与新的 DS-1 样 G1/G3/G9/G8P[8]和 G2P[4]株以及 G2P[4]株聚类。巴西 IAL-R193/2017/G8P[8]属于 VP1/R2.XI 谱系,与亚洲检测到的具有 DS-1 样骨架的牛样 G8P[8]株聚集在一起。另一方面,巴西 IAL-R558/2017/G8P[8]具有“独特”的 VP1/R2 谱系,以前从未描述过,与任何 DS-1 样参考株都没有聚集在一起。总的来说,我们的研究结果表明,巴西具有 DS-1 样骨架的牛样 G8P[8]株正在不断进化,可能与当地的 RVA 株重组,而不是直接与亚洲的进口株有关。巴西 G8P[6]-DS-1 样株与同一 DS-1 基因型组合的附近共同循环的美洲株重组。然而,系统发育分析表明,这些株系具有一些来自非洲的遗传起源。最后,巴西 G8P[4]-DS-1 样株并非源自非洲,而是可能从欧洲输入。本研究未发现巴西 G8 株系有近期发生人畜共患重组的迹象。巴西 G8 株系仍呈间歇性和局部性分布,这表明该国并未出现潜在的暴发。本研究表明了巴西 G8RVA 株系的多样性,并对 G8P[4]/P[6]/P[8]RVA 全球遗传多样性和进化有了更深入的了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3797/10056101/f785b1e1fadd/viruses-15-00664-g001a.jpg

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