• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

巴西 13 年间人类轮状病毒 G8 株的基因组特征:具有 DS-1 样骨架的新型牛样 G8P[8] 株的检测。

Genomic Constellation of Human Rotavirus G8 Strains in Brazil over a 13-Year Period: Detection of the Novel Bovine-like G8P[8] Strains with the DS-1-like Backbone.

机构信息

Enteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.

General Coordination of Public Health Laboratories, Department of Strategic Articulation in Epidemiology and Health Surveillance, Ministry of Health, Brasília 70068-900, Brazil.

出版信息

Viruses. 2023 Mar 1;15(3):664. doi: 10.3390/v15030664.

DOI:10.3390/v15030664
PMID:36992373
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10056101/
Abstract

Rotavirus (RVA) G8 is frequently detected in animals, but only occasionally in humans. G8 strains, however, are frequently documented in nations in Africa. Recently, an increase in G8 detection was observed outside Africa. The aims of the study were to monitor G8 infections in the Brazilian human population between 2007 and 2020, undertake the full-genotype characterization of the four G8P[4], six G8P[6] and two G8P[8] RVA strains and conduct phylogenetic analysis in order to understand their genetic diversity and evolution. A total of 12,978 specimens were screened for RVA using ELISA, PAGE, RT-PCR and Sanger sequencing. G8 genotype represented 0.6% (15/2434) of the entirely RVA-positive samples. G8P[4] comprised 33.3% (5/15), G8P[6] 46.7% (7/15) and G8P[8] 20% (3/15). All G8 strains showed a short RNA pattern. All twelve selected G8 strains displayed a DS-1-like genetic backbone. The whole-genotype analysis on a DS-1-like backbone identified four different genotype-linage constellations. According to VP7 analysis, the Brazilian G8P[8] strains with the DS-1-like backbone strains were derived from cattle and clustered with newly DS-1-like G1/G3/G9/G8P[8] strains and G2P[4] strains. Brazilian IAL-R193/2017/G8P[8] belonged to a VP1/R2.XI lineage and were grouped with bovine-like G8P[8] strains with the DS-1-like backbone strains detected in Asia. Otherwise, the Brazilian IAL-R558/2017/G8P[8] possess a "Distinct" VP1/R2 lineage never previously described and grouped apart from any of the DS-1-like reference strains. Collectively, our findings suggest that the Brazilian bovine-like G8P[8] strains with the DS-1-like backbone strains are continuously evolving and likely reassorting with local RVA strains rather than directly relating to imports from Asia. The Brazilian G8P[6]-DS-1-like strains have been reassorted with nearby co-circulating American strains of the same DS-1 genotype constellation. However, phylogenetic analyses revealed that these strains have some genetic origin from Africa. Finally, rather than being African-born, Brazilian G8P[4]-DS-1-like strains were likely imported from Europe. None of the Brazilian G8 strains examined here exhibited signs of recent zoonotic reassortment. G8 strains continued to be found in Brazil according to their intermittent and localized pattern, thus, does not suggest that a potential emergence is taking place in the country. Our research demonstrates the diversity of G8 RVA strains in Brazil and adds to the understanding of G8P[4]/P[6]/P[8] RVA genetic diversity and evolution on a global scale.

摘要

轮状病毒(RVA)G8 常在动物中被检测到,但在人类中很少见。然而,G8 株在非洲国家经常被记录到。最近,在非洲以外地区也观察到 G8 的检出率增加。本研究的目的是监测 2007 年至 2020 年间巴西人群中 G8 感染情况,对 4 株 G8P[4]、6 株 G8P[6]和 2 株 G8P[8]RVA 株进行全基因组特征分析,以了解其遗传多样性和进化。使用 ELISA、PAGE、RT-PCR 和 Sanger 测序对 12978 份标本进行了 RVA 筛查。G8 基因型占全部 RVA 阳性样本的 0.6%(15/2434)。G8P[4]占 33.3%(5/15),G8P[6]占 46.7%(7/15),G8P[8]占 20%(3/15)。所有 G8 株均表现出短 RNA 模式。所有 12 株选定的 G8 株均显示出 DS-1 样遗传骨架。基于 DS-1 样骨架的全基因组分析确定了四种不同的基因型谱系组合。根据 VP7 分析,巴西 G8P[8]与 DS-1 样株相关的菌株源自牛,与新的 DS-1 样 G1/G3/G9/G8P[8]和 G2P[4]株以及 G2P[4]株聚类。巴西 IAL-R193/2017/G8P[8]属于 VP1/R2.XI 谱系,与亚洲检测到的具有 DS-1 样骨架的牛样 G8P[8]株聚集在一起。另一方面,巴西 IAL-R558/2017/G8P[8]具有“独特”的 VP1/R2 谱系,以前从未描述过,与任何 DS-1 样参考株都没有聚集在一起。总的来说,我们的研究结果表明,巴西具有 DS-1 样骨架的牛样 G8P[8]株正在不断进化,可能与当地的 RVA 株重组,而不是直接与亚洲的进口株有关。巴西 G8P[6]-DS-1 样株与同一 DS-1 基因型组合的附近共同循环的美洲株重组。然而,系统发育分析表明,这些株系具有一些来自非洲的遗传起源。最后,巴西 G8P[4]-DS-1 样株并非源自非洲,而是可能从欧洲输入。本研究未发现巴西 G8 株系有近期发生人畜共患重组的迹象。巴西 G8 株系仍呈间歇性和局部性分布,这表明该国并未出现潜在的暴发。本研究表明了巴西 G8RVA 株系的多样性,并对 G8P[4]/P[6]/P[8]RVA 全球遗传多样性和进化有了更深入的了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3797/10056101/c55bdb31e8d4/viruses-15-00664-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3797/10056101/f785b1e1fadd/viruses-15-00664-g001a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3797/10056101/c55bdb31e8d4/viruses-15-00664-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3797/10056101/f785b1e1fadd/viruses-15-00664-g001a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3797/10056101/c55bdb31e8d4/viruses-15-00664-g002.jpg

相似文献

1
Genomic Constellation of Human Rotavirus G8 Strains in Brazil over a 13-Year Period: Detection of the Novel Bovine-like G8P[8] Strains with the DS-1-like Backbone.巴西 13 年间人类轮状病毒 G8 株的基因组特征:具有 DS-1 样骨架的新型牛样 G8P[8] 株的检测。
Viruses. 2023 Mar 1;15(3):664. doi: 10.3390/v15030664.
2
Genetic diversity and evolution of G12P[6] DS-1-like and G12P[9] AU-1-like Rotavirus strains in Brazil.巴西 G12P[6] DS-1 样和 G12P[9] AU-1 样轮状病毒株的遗传多样性和进化。
Funct Integr Genomics. 2024 May 11;24(3):92. doi: 10.1007/s10142-024-01360-9.
3
Emergence of Rare Bovine-Human Reassortant DS-1-Like Rotavirus A Strains with G8P[8] Genotype in Human Patients in the Czech Republic.罕见牛-人重配 DS-1 样轮状病毒 A 株在捷克共和国人类患者中出现,其基因型为 G8P[8]。
Viruses. 2019 Nov 1;11(11):1015. doi: 10.3390/v11111015.
4
Genomic constellation of human Rotavirus A strains identified in Northern Brazil: a 6-year follow-up (2010-2016).巴西北部人类轮状病毒 A 株的基因组特征:6 年随访(2010-2016 年)。
Rev Inst Med Trop Sao Paulo. 2020 Dec 18;62:e98. doi: 10.1590/S1678-9946202062098. eCollection 2020.
5
Whole genome analyses of African G2, G8, G9, and G12 rotavirus strains using sequence-independent amplification and 454® pyrosequencing.利用无序列依赖性扩增和 454®焦磷酸测序技术对非洲 G2、G8、G9 和 G12 轮状病毒株进行全基因组分析。
J Med Virol. 2011 Nov;83(11):2018-42. doi: 10.1002/jmv.22207.
6
Characterization of an Unusual DS-1-Like G8P[8] Rotavirus Strain from Japan in 2017: Evolution of Emerging DS-1-Like G8P[8] Strains through Reassortment.2017 年日本一株罕见 DS-1 样 G8P[8]轮状病毒的特征:通过重配产生的新兴 DS-1 样 G8P[8] 株系的进化。
Jpn J Infect Dis. 2019 Jul 24;72(4):256-260. doi: 10.7883/yoken.JJID.2018.484. Epub 2019 Feb 28.
7
Full Genome Characterization of Novel DS-1-Like G8P[8] Rotavirus Strains that Have Emerged in Thailand: Reassortment of Bovine and Human Rotavirus Gene Segments in Emerging DS-1-Like Intergenogroup Reassortant Strains.泰国出现的新型DS-1样G8P[8]轮状病毒株的全基因组特征:新兴的DS-1样基因间重组株中牛和人轮状病毒基因片段的重配
PLoS One. 2016 Nov 1;11(11):e0165826. doi: 10.1371/journal.pone.0165826. eCollection 2016.
8
Whole genomic constellation of the first human G8 rotavirus strain detected in Japan.在日本检测到的首例人类G8轮状病毒株的全基因组图谱。
Infect Genet Evol. 2015 Oct;35:184-93. doi: 10.1016/j.meegid.2015.07.033. Epub 2015 Aug 11.
9
Whole genome characterization of feline-like G3P[8] reassortant rotavirus A strains bearing the DS-1-like backbone genes detected in Vietnam, 2016.越南 2016 年检测到的类似猫科动物的 G3P[8]重组轮状病毒 A 株,其 DS-1 样骨干基因的全基因组特征。
Infect Genet Evol. 2019 Sep;73:1-6. doi: 10.1016/j.meegid.2019.04.007. Epub 2019 Apr 9.
10
Increasing predominance of G8P[8] species A rotaviruses in children admitted to hospital with acute gastroenteritis in Thailand, 2010-2013.2010 - 2013年泰国因急性胃肠炎住院儿童中G8P[8]型A组轮状病毒的优势日益增加。
Arch Virol. 2018 Aug;163(8):2165-2178. doi: 10.1007/s00705-018-3848-0. Epub 2018 Apr 25.

引用本文的文献

1
Unveiling the Genomic Landscape of G2P[6] Rotavirus a Strains in Brazil: Evolutionary and Epidemiological Perspectives.揭示巴西G2P[6]轮状病毒A株的基因组格局:进化和流行病学视角
Viruses. 2025 Aug 11;17(8):1103. doi: 10.3390/v17081103.
2
Genetic characteristics of rotavirus a in Shenzhen and Zhuhai, China, 2020-2023.2020 - 2023年中国深圳和珠海的A组轮状病毒基因特征
BMC Genomics. 2025 Aug 18;26(1):752. doi: 10.1186/s12864-025-11953-8.
3
Whole-Genome Analysis of G2P[4] Rotavirus Strains in China in 2022 and Comparison of Their Antigenic Epitopes with Vaccine Strains.

本文引用的文献

1
Predominance of DS-1-like G8P[8] rotavirus reassortant strains in children hospitalized with acute gastroenteritis in Thailand, 2018-2020.2018-2020 年泰国住院急性胃肠炎患儿中以 DS-1 样 G8P[8] 轮状病毒重组株为主。
J Med Virol. 2023 Jun;95(6):e28870. doi: 10.1002/jmv.28870.
2
Phylogeography of Rotavirus G8P[8] Detected in Argentina: Evidence of Transpacific Dissemination.阿根廷检测到的轮状病毒 G8P[8]的系统发生地理学研究:跨太平洋传播的证据。
Viruses. 2022 Oct 9;14(10):2223. doi: 10.3390/v14102223.
3
[8] .[8] .
2022年中国G2P[4]轮状病毒株的全基因组分析及其抗原表位与疫苗株的比较
Viruses. 2025 Feb 26;17(3):326. doi: 10.3390/v17030326.
4
Genomic analysis of DS-1-like human rotavirus A strains uncovers genetic relatedness of NSP4 gene with animal strains in Manhiça District, Southern Mozambique.对类似DS-1的人轮状病毒A株进行基因组分析,揭示了莫桑比克南部曼希卡区NSP4基因与动物株的遗传相关性。
Sci Rep. 2024 Dec 28;14(1):30705. doi: 10.1038/s41598-024-79767-4.
5
Driving forces of continuing evolution of rotaviruses.轮状病毒持续进化的驱动力。
World J Virol. 2024 Jun 25;13(2):93774. doi: 10.5501/wjv.v13.i2.93774.
6
Genetic diversity and evolution of G12P[6] DS-1-like and G12P[9] AU-1-like Rotavirus strains in Brazil.巴西 G12P[6] DS-1 样和 G12P[9] AU-1 样轮状病毒株的遗传多样性和进化。
Funct Integr Genomics. 2024 May 11;24(3):92. doi: 10.1007/s10142-024-01360-9.
7
Assessment of Gastroenteric Viruses in Marketed Bivalve Mollusks in the Tourist Cities of Rio de Janeiro, Brazil, 2022.2022 年巴西里约热内卢旅游城市市售双壳贝类中胃肠病毒的评估。
Viruses. 2024 Feb 20;16(3):317. doi: 10.3390/v16030317.
8
Genetic diversity of rotavirus A in Argentina during 2019-2022: detection of G6 strains and insights regarding its dissemination.2019-2022 年阿根廷轮状病毒 A 的遗传多样性:G6 株的检测及其传播的见解。
Arch Virol. 2023 Sep 13;168(10):251. doi: 10.1007/s00705-023-05874-8.
Virusdisease. 2022 Jun;33(2):215-218. doi: 10.1007/s13337-022-00765-z. Epub 2022 Apr 25.
4
Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment.2020/21 年在中国广州分离的两株 G8P[8]轮状病毒的遗传特征:基因组重配的证据。
BMC Infect Dis. 2022 Jun 28;22(1):579. doi: 10.1186/s12879-022-07542-9.
5
Leveraging Beneficial Off-Target Effects of Live-Attenuated Rotavirus Vaccines.利用减毒活轮状病毒疫苗的有益脱靶效应。
Vaccines (Basel). 2022 Mar 10;10(3):418. doi: 10.3390/vaccines10030418.
6
Phylogenetic analysis of VP7 and VP4 genes of the most predominant human group A rotavirus G12 identified in children with acute gastroenteritis in Himachal Pradesh, India during 2013-2016.对2013年至2016年期间在印度喜马偕尔邦急性胃肠炎儿童中鉴定出的最主要的人A组轮状病毒G12的VP7和VP4基因进行系统发育分析。
J Med Virol. 2021 Nov;93(11):6200-6209. doi: 10.1002/jmv.27142. Epub 2021 Jun 24.
7
Emergence of unusual rotavirus G9P[4] and G8P[8] strains during post vaccination surveillance in Argentina, 2017-2018.2017-2018 年阿根廷疫苗接种后监测中出现罕见轮状病毒 G9P[4]和 G8P[8]株。
Infect Genet Evol. 2021 Sep;93:104940. doi: 10.1016/j.meegid.2021.104940. Epub 2021 May 24.
8
The Rotavirus Vaccine Landscape, an Update.轮状病毒疫苗概况更新
Pathogens. 2021 Apr 26;10(5):520. doi: 10.3390/pathogens10050520.
9
Genomic constellation of human Rotavirus A strains identified in Northern Brazil: a 6-year follow-up (2010-2016).巴西北部人类轮状病毒 A 株的基因组特征:6 年随访(2010-2016 年)。
Rev Inst Med Trop Sao Paulo. 2020 Dec 18;62:e98. doi: 10.1590/S1678-9946202062098. eCollection 2020.
10
Genotype constellation of a rotavirus A field strain with an uncommon G8P[11] genotype combination in a rotavirus-vaccinated dairy cattle herd.一株轮状病毒 A 田间分离株的基因型组合,在接种轮状病毒疫苗的奶牛群中出现了一种不常见的 G8P[11]基因型组合。
Arch Virol. 2020 Aug;165(8):1855-1861. doi: 10.1007/s00705-020-04675-7. Epub 2020 May 29.