Phan Tung, Kobayashi Masaaki, Nagasawa Koo, Hatazawa Riona, Thi Kim Pham Ngan, Miyashita Hideaki, Komoto Satoshi, Tajima Takeshi, Baba Tuneyoshi, Okitsu Shoko, Khamrin Pattara, Maneekarn Niwat, Kimura Hirokazu, Kobayashi Takeshi, Hayakawa Satoshi, Ushijima Hiroshi
Division of Clinical Microbiology, University of Pittsburgh, University of Pittsburgh Medical Center, Pittsburgh, PA USA.
Japanese Virus Gastroenteritis Research Group, Nihon University School of Medicine, Tokyo, Japan.
Virusdisease. 2022 Jun;33(2):215-218. doi: 10.1007/s13337-022-00765-z. Epub 2022 Apr 25.
Unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P [8] rotaviruses) have emerged and rapidly spread in several countries. In this study, the nucleotide sequences of seven human rotavirus G8P [8] strains in 2017 and 2019 in Japan were determined using viral metagenomics. Its genomic constellation (VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5 genes) was defined as G8-P [8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Our genetic analysis revealed that the Japanese G8P [8] rotavirus strains in 2017 and 2019 were classified into the same lineages G8-5 and P [8]-3, but they were phylogenetically located on separate branches and belonged to distinct clusters. Our study is the first attempt to investigate the evolution of emerging rotavirus G8P [8] in Japan.
具有牛样G8基因型的异常DS-1样基因间重配轮状病毒(DS-1样G8P[8]轮状病毒)已出现并在多个国家迅速传播。在本研究中,利用病毒宏基因组学测定了2017年和2019年日本7株人轮状病毒G8P[8]毒株的核苷酸序列。其基因组构成(VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5基因)被定义为G8-P[8]-I2-R2-C2-M2-A2-N2-T2-E2-H2。我们的遗传分析表明,2017年和2019年的日本G8P[8]轮状病毒毒株被归类为同一谱系G8-5和P[8]-3,但它们在系统发育上位于不同的分支,属于不同的簇。我们的研究是首次尝试调查日本新兴轮状病毒G8P[8]的进化情况。