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The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees.局部时钟排列检验:一种在系统发生树上比较分子进化速率的简单检验方法。
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Neighbor joining algorithms for inferring phylogenies via LCA distances.通过最近共同祖先(LCA)距离推断系统发育树的邻接法算法。
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Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction.用于管状物体中心线提取的高度脊线遍历中的初始化、噪声、奇点和尺度
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Statistical tests of neutrality of mutations.突变中性的统计检验。
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大型树形结构数据的统计检验

STATISTICAL TESTS FOR LARGE TREE-STRUCTURED DATA.

作者信息

Bharath Karthik, Kambadur Prabhanjan, Dey Dipak K, Rao Arvind, Baladandayuthapani Veerabhadran

机构信息

School of Mathematical Sciences, University of Nottingham, Nottingham, NG7 2RD, U.K.

Bloomberg LP, New York, NY 10022, USA.

出版信息

J Am Stat Assoc. 2017;112(520):1733-1743. doi: 10.1080/01621459.2016.1240081. Epub 2017 Aug 7.

DOI:10.1080/01621459.2016.1240081
PMID:37013199
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10066867/
Abstract

We develop a general statistical framework for the analysis and inference of large tree-structured data, with a focus on developing asymptotic goodness-of-fit tests. We first propose a consistent statistical model for binary trees, from which we develop a class of invariant tests. Using the model for binary trees, we then construct tests for general trees by using the distributional properties of the Continuum Random Tree, which arises as the invariant limit for a broad class of models for tree-structured data based on conditioned Galton-Watson processes. The test statistics for the goodness-of-fit tests are simple to compute and are asymptotically distributed as and random variables. We illustrate our methods on an important application of detecting tumour heterogeneity in brain cancer. We use a novel approach with tree-based representations of magnetic resonance images and employ the developed tests to ascertain tumor heterogeneity between two groups of patients.

摘要

我们开发了一个用于分析和推断大型树状结构数据的通用统计框架,重点是开发渐近拟合优度检验。我们首先为二叉树提出了一个一致的统计模型,并从中开发了一类不变检验。然后,利用二叉树模型,我们通过连续随机树的分布特性为一般树构建检验,连续随机树是基于条件高尔顿 - 沃森过程的一大类树状结构数据模型的不变极限。拟合优度检验的检验统计量易于计算,并且渐近分布为 和 随机变量。我们在检测脑癌肿瘤异质性的重要应用中展示了我们的方法。我们使用一种基于磁共振图像树状表示的新颖方法,并运用所开发的检验来确定两组患者之间的肿瘤异质性。